YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE08876

General Information:
Name(s) found: CE08876 [WormBase]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • WBGene00008220 status:Partially_confirmed UniProt:P91982 protein_id:CAB02856.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 713 amino acids

    Gene Ontology:
    Cellular Component: extracellular space [IEALink to PubMed article]
    Biological Process: carbohydrate metabolic process [IEALink to PubMed article]
    Molecular Function: alpha-amylase activity [IEALink to PubMed article]
    catalytic activity [IEALink to PubMed article]
    calcium ion binding [IEALink to PubMed article]
    cation binding [IEALink to PubMed article]
    hydrolase activity, hydrolyzing O-glycosyl compounds [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKHLFLFLF IKSSIAYNFY WYDKTQTLQN RQTMVHLFEW KWADVAKECE NFLQYYGYGA  60
   61 VQVSPPMEHL KAFPNNNYPW WVRYQPVSYK LDSRSGNEQE FQDMVNRCNK VGVRIIVDIV 120
  121 MNHMVGIGQK SGNGVGSSGS SSFDGTHGVQ SFPGVPYSLG DFNNPKCDGD IQGSDYQNSA 180
  181 EHVKDCRLVG LLDLNQASAT VRAKIVAYLN KLVDMGVAGF RHDASKHMWP QDILNILNDV 240
  241 KDLRSDIYGS NQRPFAVHEV IDRGGEAVKC GDYFGNGRYT NFNFGAAVSA AAKQQSDWKY 300
  301 LANLGPGYGY GNNEDHDVLN FIDNHDNQRD SSPYVVTYKD GQKYNLAVGF MLAWPYGYPR 360
  361 VMSSFAFSYS DQSPPNSGAS NDYATTSPTF NGDQTCNSNS GWVCEHRWPA IRQMAKFRSA 420
  421 VQGTAAADIV TDTRRIAFAR DGKGFFALNQ QDGAWTKIFA TNLPAGDYCD HFSGGLDNGK 480
  481 CVGTKITVRD DHTSYLSVPS NSIVAISLDS KLTPYTPPAP PSGYSTTVIL LKKDTNPGQN 540
  541 IFVRGGTSQA HNGKCSTGPY QQSSDPCAIP MYHATTVPFV FAEYLTWSQQ DNYLDFEGAE 600
  601 INQGTHDGAA AFGTPLAYST NDKTAIEYQP YNKYGPGYWI AVLRMDCSKA EQGWFEVKGY 660
  661 ETPDIGWEGD IKQGSCSGSV GGSAPFSSIN HVAKCGAVNV FTWGSASCVI DSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..546] PSI-BLAST 100.0 HUMAN PANCREATIC ALPHA-AMYLASE FROM PICHIA PASTORIS, GLYCOSYLATED PROTEIN
    2 View Details [547..607] deduced N/A No confident structure predictions are available.
    3 View Details [608..713] PSI-BLAST 19.69897 GLUCOAMYLASE, GRANULAR STARCH-BINDING DOMAIN COMPLEX WITH CYCLODEXTRIN, NMR, MINIMIZED AVERAGE STRUCTURE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  4.11319792356479 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  3.92012282533754 bayes_pls_golite062009
  • hydrolase activity
    		•  2.30046070709431 bayes_pls_golite062009
  • catalytic activity
    		•  1.85569074294201 bayes_pls_golite062009
  • chitinase activity
    		•  1.8132391603727 bayes_pls_golite062009
  • amylase activity
    		•  1.38959979746158 bayes_pls_golite062009
  • glucosidase activity
    		•  0.528679164808812 bayes_pls_golite062009
  • hexosaminidase activity
    		•  0.423006654245821 bayes_pls_golite062009
  • receptor binding
    		•  0.131188274937943 bayes_pls_golite062009
  • alpha-galactosidase activity
    		•  0.113591899485521 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.102788238231918 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle