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Protein Overview: srab-10

General Information:
Name(s) found: srab-10 / CE08596 [WormBase]
Description(s) found:
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  • WBGene00016476 locus:srab-10 status:Partially_confirmed UniProt:Q8ITZ6 protein_id:CCD66860.1 [WormBase]
  • pir||F88989 protein C36C5.7 [imported] - Caenorhabditis elegans [NCBI NR]
  • gi|25167243|gb|AAN73877.1| Serpentine receptor, class ab (class a-like) protein 10 [Caenorhabditis elegans] [NCBI NR]
  • gi|17558448|ref|NP_503863.1| Serpentine Receptor, class AB (class A-like) family member (srab-10) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE08596 WBGene00016476 locus:srab-10 7TM chemoreceptor, srab family status:Partially_confirmed TR:Q8ITZ6 protein_id:AAN73877.1 [wormpep150.fasta]
  • 08596 WBGene00016476 status:Partially_confirmed TR:Q8ITZ6 protein_id:AAN73877.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative protein family member, with at least 4 transmembrane domains (5D620) [Caenorhabditis elegans]gi|25167243|gb|AAN73877.1| Hypothetical protein C36C5.7 [Caenorhabditis elegans]gi|25353794|pir||F88989 protein C36C5.7 [imported] - Caenorhabditis ele [nrdb_11152004_Chlamydomonas]
  • CE08596 WBGene00016476 status:Partially_confirmed TR:Q8ITZ6 protein_id:AAN73877.1 [wormpep132.fasta]
  • 08596 WBGene00016476 locus:srab-10 7TM chemoreceptor, srab family status:Partially_confirmed TR:Q8ITZ6 protein_id:AAN73877.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • status:Partially_confirmed TR:Q8ITZ6 protein_id:AAN73877.1 [wormpep115.fasta.reversed]
  • CE08596 status:Predicted [wormpep80.hongbin]
  • CE08596 WBGene00016476 locus:srab-10 7TM chemoreceptor, srab family status:Partially_confirmed UniProt:Q8ITZ6_CAEEL protein_id:AAN73877.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE08596 WBGene00016476 locus:srab-10 7TM chemoreceptor, srab family status:Partially_confirmed UniProt:Q8ITZ6_CAEEL protein_id:AAN73877.1| [wormORF-contam.fasta]
  • Serpentine Receptor, class AB (class A-like) family member (srab-10) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Serpentine receptor, class ab (class a-like) protein 10 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE08596 WBGene00016476 locus:srab-10 7TM chemoreceptor, srab family status:Partially_confirmed UniProt:Q8ITZ6 protein_id:AAN73877.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE08596 WBGene00016476 locus:srab-10 7TM chemoreceptor, srab family status:Partially_confirmed UniProt:Q8ITZ6 protein_id:CCD66860.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE08596 WBGene00016476 locus:srab-10 status:Partially_confirmed UniProt:Q8ITZ6 protein_id:CCD66860.1 7TM GPCR, serpentine receptor class ab (A-like)(Srab) [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 320 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: sensory perception of chemical stimulus [IEALink to PubMed article]
    Molecular Function: transmembrane receptor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLSTSSFL QFTLLLNLIA GAIAFVLTIA ASYALWKSRV TKLFHINVII IFQVHLAGFF  60
   61 IHCFNRIILH ASDLYRYTLL DYCDMPSSTT RCFAFRIQYV YGLWLVGATT VPLVIERYIA 120
  121 TIKSSSYEHI GYRLGIYLAL LQVTIAFICT FIAFHEFSFD EPTMSYCIGV KFGEFNNAEI 180
  181 VSLVNLVVQI IARICFQFLF KQNEKLRSEQ LTSTLSTRYS LEQNLKSIEI LKCFANLQCA 240
  241 FMIVHMVLFV YILQSDADFE QSTYIALVEL NSPHPFYAIV SILAFFRTVH SSEVKLKKNL 300
  301 QNHVNADQNV YFENFNKILQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..320] PSI-BLAST 40.0 Rhodopsin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • signal transducer activity
    		•  1.40205587023688 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.40205587023688 bayes_pls_golite062009
  • receptor activity
    		•  1.39249706683393 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  1.04604785247703 bayes_pls_golite062009
  • G-protein coupled receptor activity
    		•  1.016863453778 bayes_pls_golite062009
  • binding
    		•  0.101461761820711 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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