YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srab-10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLSTSSFL QFTLLLNLIA GAIAFVLTIA ASYALWKSRV TKLFHINVII IFQVHLAGFF  60
   61 IHCFNRIILH ASDLYRYTLL DYCDMPSSTT RCFAFRIQYV YGLWLVGATT VPLVIERYIA 120
  121 TIKSSSYEHI GYRLGIYLAL LQVTIAFICT FIAFHEFSFD EPTMSYCIGV KFGEFNNAEI 180
  181 VSLVNLVVQI IARICFQFLF KQNEKLRSEQ LTSTLSTRYS LEQNLKSIEI LKCFANLQCA 240
  241 FMIVHMVLFV YILQSDADFE QSTYIALVEL NSPHPFYAIV SILAFFRTVH SSEVKLKKNL 300
  301 QNHVNADQNV YFENFNKILQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.73
Transmembrane Helix	14	36	0.91
Cytoplasmic	37	42	0.77
Transmembrane Helix	43	64	0.88
Non-Cytoplasmic	65	96	0.75
Transmembrane Helix	97	120	0.75
Cytoplasmic	121	133	0.82
Transmembrane Helix	134	155	0.94
Non-Cytoplasmic	156	177	0.85
Transmembrane Helix	178	200	0.78
Cytoplasmic	201	232	0.95
Transmembrane Helix	233	253	0.91
Non-Cytoplasmic	254	272	0.86
Transmembrane Helix	273	290	0.80
Cytoplasmic	291	320	0.87