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Protein Overview: clec-117

General Information:
Name(s) found: clec-117 / CE07750 [WormBase]
Description(s) found:
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  • WBGene00015193 locus:clec-117 status:Confirmed UniProt:P90996 protein_id:CCD61944.1 [WormBase]
  • pir||T25463 hypothetical protein B0432.12 - Caenorhabditis elegans [NCBI NR]
  • gi|17531337|ref|NP_493698.1| C-type LECtin family member (clec-117) [Caenorhabditis elegans] [NCBI NR]
  • gi|1707145|gb|AAB37896.1| C-type lectin protein 117 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE07750 WBGene00015193 status:Partially_confirmed TR:P90996 protein_id:AAB37896.1 [wormpep150.fasta]
  • 07750 WBGene00015193 status:Partially_confirmed TR:P90996 protein_id:AAB37896.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • c-type lectin precursor family member (2A586) [Caenorhabditis elegans]gi|1707145|gb|AAB37896.1| Hypothetical protein B0432.12 [Caenorhabditis elegans]gi|7494943|pir||T25463 hypothetical protein B0432.12 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:P90996 protein_id:AAB37896.1 [wormpep115.fasta.reversed]
  • CE07750 status:Partially_confirmed TR:P90996 protein_id:AAB37896.1 [wormpep80.hongbin]
  • CE07750 WBGene00015193 locus:clec-117 status:Partially_confirmed UniProt:P90996_CAEEL protein_id:AAB37896.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE07750 WBGene00015193 locus:clec-117 status:Partially_confirmed UniProt:P90996_CAEEL protein_id:AAB37896.1| [wormORF-contam.fasta]
  • Hypothetical protein B0432.12 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • B0432.12 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE07750 WBGene00015193 locus:clec-117 status:Confirmed UniProt:P90996 protein_id:AAB37896.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE07750 WBGene00015193 locus:clec-117 status:Confirmed UniProt:P90996 protein_id:CCD61944.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • C-type LECtin OS=Caenorhabditis elegans GN=clec-117 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 185 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: positive regulation of growth rate [IMPLink to PubMed article]
    cell adhesion [IEALink to PubMed article]
    Molecular Function: sugar binding [IEALink to PubMed article]
    hyaluronic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKALLPLLL WISTGSTAPA GVATYLRSNG IVAFHKLYHL KMNFPRAKKH CEQNGAHLAG  60
   61 ITSREEAQKL IDLANEAGES NEQYWLGGQR KGECYGMRNY DKDHGLNATC SLSNVVQWLD 120
  121 NVAETIDPDW WKIPGPSHIP FNMPQQCLSF VHGDRDWTTP NDPGFLDDIG CDVPRKFFCT 180
  181 ELHEW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..185] PSI-BLAST 19.30103 Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.13629480035749 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.44675717945952 bayes_pls_golite062009
  • protein binding
    		•  0.059857076934361 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle