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Protein Overview: spn-4

General Information:
Name(s) found: spn-4 / CE07598 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00004984 locus:spn-4 status:Confirmed UniProt:G5EF02 protein_id:CCD72494.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 351 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    P granule [IDALink to PubMed article]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNTQIFTNF AHRAHDGLPF NSANPSNKDP IFTMPISVKP KTREPASFTD NRIYVSNIPF  60
   61 SFREQDLAAM FFAYGRVLSV EIVTNDRGSK GFGFVTLDSI ESCEKARAAL HESHVQGRII 120
  121 EVRRATPTRR KLINNPQNEV LPPPKLCVDL RAPHNLWRAE PMHQLFKEKE NTTCFPEAGF 180
  181 MMAPYRSNGI FNTRSLVQTK PPRCTKHSEL KLSSAGEYFC KNGEPTTETS ILMCMHRQNS 240
  241 PCSNKCSDSS NHELSDVELN SIFPHHLRDQ ITALLDTSNH FGSGNNSANK GKRAPSVTSS 300
  301 GLRSSESETV SDEEIHWSPH NSPDYLLAAL YEGSTSFHGK SVSPPKESSS Q

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] PSI-BLAST 33.045757 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [142..351] PSI-BLAST 4.69897 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.10590295737522 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.43479844212501 bayes_pls_golite062009
  • RNA binding
    		•  0.426544317458995 bayes_pls_golite062009
  • protein binding
    		•  0.303849616374798 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle