| Protein: | spn-4 |
| Organism: | Caenorhabditis elegans |
| Length: | 351 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spn-4.
| Description | E-value | Query Range |
Subject Range |
|
|
216.0 | [0..2] | [308..137] |
|
Region A: Residues: [1-141] |
1 11 21 31 41 51
| | | | | |
1 MQNTQIFTNF AHRAHDGLPF NSANPSNKDP IFTMPISVKP KTREPASFTD NRIYVSNIPF 60
61 SFREQDLAAM FFAYGRVLSV EIVTNDRGSK GFGFVTLDSI ESCEKARAAL HESHVQGRII 120
121 EVRRATPTRR KLINNPQNEV L
|
| Detection Method: |  |
| Confidence: | 33.045757 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.10590295737522 | bayes_pls_golite062009 |
| nucleic acid binding | 1.43479844212501 | bayes_pls_golite062009 |
| RNA binding | 0.426544317458995 | bayes_pls_golite062009 |
| protein binding | 0.303849616374798 | bayes_pls_golite062009 |
|
Region A: Residues: [142-351] |
1 11 21 31 41 51
| | | | | |
1 PPPKLCVDLR APHNLWRAEP MHQLFKEKEN TTCFPEAGFM MAPYRSNGIF NTRSLVQTKP 60
61 PRCTKHSELK LSSAGEYFCK NGEPTTETSI LMCMHRQNSP CSNKCSDSSN HELSDVELNS 120
121 IFPHHLRDQI TALLDTSNHF GSGNNSANKG KRAPSVTSSG LRSSESETVS DEEIHWSPHN 180
181 SPDYLLAALY EGSTSFHGKS VSPPKESSSQ
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
