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Protein Overview: pccb-1

General Information:
Name(s) found: pccb-1 / CE07269 [WormBase]
Description(s) found:
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  • WBGene00018701 locus:pccb-1 status:Confirmed UniProt:Q20676 protein_id:CCD66477.1 [WormBase]
  • pir||T16428 propionyl-CoA carboxylase (EC 6.4.1.3) beta chain F52E4.1 [similarity] - Caenorhabditis elegans [NCBI NR]
  • gi|25147359|ref|NP_741743.1| Propionyl Coenzyme A Carboxylase Beta subunit family member (pccb-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|1293830|gb|AAB54030.1| Hypothetical protein F52E4.1a [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE07269 WBGene00018701 propionyl-CoA carboxylase beta status:Confirmed TR:Q20676 protein_id:AAB54030.1 [wormpep150.fasta]
  • 07269 WBGene00018701 propionyl-CoA carboxylase beta status:Confirmed TR:Q20676 protein_id:AAB54030.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • propionyl-coa carboxylase (58.5 kD) (XD709) [Caenorhabditis elegans]gi|1293830|gb|AAB54030.1| Hypothetical protein F52E4.1a [Caenorhabditis elegans]gi|7438118|pir||T16428 propionyl-CoA carboxylase (EC 6.4.1.3) beta chain F52E4.1 [similarity] - Caenorhab [nrdb_11152004_Chlamydomonas]
  • propionyl-CoA carboxylase beta status:Confirmed TR:Q20676 protein_id:AAB54030.1 [wormpep115.fasta.reversed]
  • CE07269 propionyl-CoA carboxylase beta status:Confirmed TR:Q20676 protein_id:AAB54030.1 [wormpep80.hongbin]
  • CE07269 WBGene00018701 locus:pccb-1 propionyl-CoA carboxylase beta status:Confirmed UniProt:Q20676_CAEEL protein_id:AAB54030.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE07269 WBGene00018701 locus:pccb-1 propionyl-CoA carboxylase beta status:Confirmed UniProt:Q20676_CAEEL protein_id:AAB54030.1| [wormORF-contam.fasta]
  • Hypothetical protein F52E4.1a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F52E4.1a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE07269 WBGene00018701 locus:pccb-1 propionyl-CoA carboxylase beta status:Confirmed TR:Q20676 protein_id:AAB54030.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE07269 WBGene00018701 locus:pccb-1 propionyl-CoA carboxylase beta status:Confirmed UniProt:Q20676 protein_id:AAB54030.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE07269 WBGene00018701 locus:pccb-1 propionyl-CoA carboxylase beta status:Confirmed UniProt:Q20676 protein_id:CCD66477.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE07269 WBGene00018701 locus:pccb-1 status:Confirmed UniProt:Q20676 protein_id:CCD66477.1 [wormpep246-ecoli-contam.fasta]
  • Propionyl Coenzyme A Carboxylase Beta subunit OS=Caenorhabditis elegans GN=pccb-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 536 amino acids

    Gene Ontology:
    Cellular Component: acetyl-CoA carboxylase complex [IEALink to PubMed article]
    Biological Process: sodium ion transport [IEALink to PubMed article]
    fatty acid biosynthetic process [IEALink to PubMed article]
    Molecular Function: acetyl-CoA carboxylase activity [IEALink to PubMed article]
    methylmalonyl-CoA decarboxylase activity [IEALink to PubMed article]
    ligase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRFARQLA LPVFNGVLHP TRATSSIAHT IKVAHKIDET REKALLGGGK KRVDAQHARG  60
   61 KLTARERIDL LLDRNTFREY DMFAEHTCND FGMQKEKYPG DSVVTGRGEI NGRTVFVFSQ 120
  121 DFTVFGGSLS SIHAKKIVKI MREAMLVGAP VIGLNDSGGA RIQEGVESLA GYADIFQENV 180
  181 MASGVVPQIS MIMGPCAGGA VYSPALTDFT FMVRDTSYLF ITGPDVVKAV TNEEVTQEEL 240
  241 GGAKTHTVTS GVAHGAFDND VDALMSLREL FNYLPLSNTD AAPIRAAEDP WDRAVPSLDT 300
  301 VVPLESTAAY NMKDVVHALV DEGDFFEIMP DYAKNLVIGF ARMNGRTVGI VGNNPKFAAG 360
  361 CLDINSSVKG ARFVRFCDAF NIPIITLVDV PGFLPGTAQE YGGIIRHGAK LLYAFAEATV 420
  421 PKITIITRKA FGGAYDVMSS KHLRGDINYA WPTAEVAVMG AKGAVSILFR NDKEHAVQHE 480
  481 EEYTELFSNP FPAAVRGFVD DIIIPSETRK KVCEDLNMLE SKKLKNPWKK HGNIPL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..536] PSI-BLAST 166.0 Crystal structure of propionyl-CoA carboxylase, beta subunit (TM0716) from THERMOTOGA MARITIMA at 2.30 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • CoA carboxylase activity
    		•  4.38629333084302 bayes_pls_golite062009
  • acetyl-CoA carboxylase activity
    		•  4.36332808516753 bayes_pls_golite062009
  • ligase activity, forming carbon-carbon bonds
    		•  4.29345455730254 bayes_pls_golite062009
  • enoyl-CoA hydratase activity
    		•  3.92947460544831 bayes_pls_golite062009
  • methylcrotonoyl-CoA carboxylase activity
    		•  2.85169024122548 bayes_pls_golite062009
  • 3-hydroxyacyl-CoA dehydrogenase activity
    		•  2.44182589784656 bayes_pls_golite062009
  • dodecenoyl-CoA delta-isomerase activity
    		•  1.80820904754223 bayes_pls_golite062009
  • catalytic activity
    		•  1.46154163027498 bayes_pls_golite062009
  • propionyl-CoA carboxylase activity
    		•  1.20853698666984 bayes_pls_golite062009
  • ligase activity
    		•  0.98581896521131 bayes_pls_golite062009
  • binding
    		•  0.578223105269736 bayes_pls_golite062009
  • 3-hydroxybutyryl-CoA epimerase activity
    		•  0.241955774397835 bayes_pls_golite062009
  • racemase and epimerase activity, acting on hydroxy acids and derivatives
    		•  0.099208209617217 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, transposing C=C bonds
    		•  0.0918189681606029 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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