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Protein Overview: col-139

General Information:
Name(s) found: col-139 / CE07218 [WormBase]
Description(s) found:
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  • WBGene00000712 locus:col-139 status:Confirmed UniProt:Q20282 protein_id:CCD71018.1 [WormBase]
  • pir||T29731 hypothetical protein F41F3.4 - Caenorhabditis elegans [NCBI NR]
  • gi|17560884|ref|NP_504252.1| COLlagen family member (col-139) [Caenorhabditis elegans] [NCBI NR]
  • gi|1280073|gb|AAA97982.1| Collagen protein 139 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE07218 WBGene00000712 locus:col-139 cuticle collagen status:Confirmed TR:Q20282 protein_id:AAA97982.1 [wormpep150.fasta]
  • 07218 WBGene00000712 locus:col-139 cuticle collagen status:Confirmed TR:Q20282 protein_id:AAA97982.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • COLlagen structural gene (col-139) [Caenorhabditis elegans]gi|1280073|gb|AAA97982.1| Collagen protein 139 [Caenorhabditis elegans]gi|7503193|pir||T29731 hypothetical protein F41F3.4 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:col-139 cuticle collagen status:Partially_confirmed TR:Q20282 protein_id:AAA97982.1 [wormpep115.fasta.reversed]
  • CE07218 cuticle collagen status:Partially_confirmed TR:Q20282 protein_id:AAA97982.1 [wormpep80.hongbin]
  • CE07218 WBGene00000712 locus:col-139 cuticle collagen status:Confirmed UniProt:Q20282_CAEEL protein_id:AAA97982.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE07218 WBGene00000712 locus:col-139 cuticle collagen status:Confirmed UniProt:Q20282_CAEEL protein_id:AAA97982.1| [wormORF-contam.fasta]
  • Collagen protein 139 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • COLlagen family member (col-139) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE07218 WBGene00000712 locus:col-139 cuticle collagen status:Confirmed UniProt:Q20282 protein_id:AAA97982.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE07218 WBGene00000712 locus:col-139 cuticle collagen status:Confirmed UniProt:Q20282 protein_id:CCD71018.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE07218 WBGene00000712 locus:col-139 status:Confirmed UniProt:Q20282 protein_id:CCD71018.1 [wormpep246-ecoli-contam.fasta]
  • COLlagen OS=Caenorhabditis elegans GN=col-139 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 310 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    phosphate transport [IEALink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    Molecular Function: structural constituent of cuticle [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQTRLKAY RFIAYSAVTL SVAAVFGICF TLPLLHNYVE GMKSHVDKEL AQCRHTTADI  60
   61 FSEMAHIKKA KNGTRFARQA GYGGDAEYED DAAVEVAPSR VSGGSCQGCC LPGPPGTPGP 120
  121 AGRPGKPGRP GACGNHGNPG KPTGLPCDPV TVPPCKPCPP GPAGEPGHDG APGAPGKPGA 180
  181 PGVGGGSGAP GAPGPKGAPG GPGQPGRDGQ PGQAGQPGSS SSEPGQPGPN GQPGPRGPPG 240
  241 QAGSPGGNGQ PGGPGQPGQR GSDGQPGNDG QPGAPGQPGQ SGGSGEKGIC PKYCAIDGGV 300
  301 FFEDGTRRRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..310] PSI-BLAST 27.69897 No description for 1y0fA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle