YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-139
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQTRLKAY RFIAYSAVTL SVAAVFGICF TLPLLHNYVE GMKSHVDKEL AQCRHTTADI  60
   61 FSEMAHIKKA KNGTRFARQA GYGGDAEYED DAAVEVAPSR VSGGSCQGCC LPGPPGTPGP 120
  121 AGRPGKPGRP GACGNHGNPG KPTGLPCDPV TVPPCKPCPP GPAGEPGHDG APGAPGKPGA 180
  181 PGVGGGSGAP GAPGPKGAPG GPGQPGRDGQ PGQAGQPGSS SSEPGQPGPN GQPGPRGPPG 240
  241 QAGSPGGNGQ PGGPGQPGQR GSDGQPGNDG QPGAPGQPGQ SGGSGEKGIC PKYCAIDGGV 300
  301 FFEDGTRRRR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.83
Transmembrane Helix	12	34	0.85
Non-Cytoplasmic	35	310	0.96