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Protein Overview: tgt-1

General Information:
Name(s) found: tgt-1 / CE06654 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00006566 locus:tgt-1 Probable queuine tRNA-ribosyltransferase status:Confirmed UniProt:Q23623 protein_id:CAA98076.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 400 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: queuosine biosynthetic process [IEALink to PubMed article]
    tRNA modification [IEALink to PubMed article]
    Molecular Function: queuine tRNA-ribosyltransferase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYDVLARAG FARRGNLHLP HSIVETPVFM PVGTQGTMKG IVPEQLVSMD CRILLCNTYH  60
   61 LGHRPGHERV KAAGGLHKMM NWNRSILTDS GGFQMVSLSK LMTVDENGVN FESPHTGEMM 120
  121 ALPPEKSIEI QQALGADIMM QLDHVIHVLT TGDIVKEAMH RSIRWLDRCK VAHTRDDQAM 180
  181 FPILQGGLNL ELRKECAKEM AKRAKVGIAI GGLSGGEEKD HFWRVVAACC AALPPHLPRY 240
  241 VMGVGFPVDL VICSFLGADM FDCVYPTRTA RFGTAMVRRG GLMQLNQKRY KEDFLPIDKK 300
  301 CECNTCKNYT RAYIHSIVGK ETVGCHLVSV HNIKHQLDLM RDVRQAIQSN SVEQFLKQFL 360
  361 YDYYGPIQSE NPSKQDSEKM REVPQWVRDA VDHMGYKLDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..400] PSI-BLAST 144.0 Y106F mutant of Z. mobilis TGT

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • queuine tRNA-ribosyltransferase activity
    		•  5.68673071384353 bayes_pls_golite062009
  • transferase activity
    		•  3.21194535271238 bayes_pls_golite062009
  • transferase activity, transferring pentosyl groups
    		•  2.84864811414771 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  2.53039738178366 bayes_pls_golite062009
  • catalytic activity
    		•  2.02168745464921 bayes_pls_golite062009
  • binding
    		•  1.29132603807317 bayes_pls_golite062009
  • protein binding
    		•  0.136438951368546 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle