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Protein Overview: CE06113

General Information:
Name(s) found: CE06113 [WormBase]
Description(s) found:
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  • WBGene00010626 status:Confirmed UniProt:Q21275 protein_id:CAA94896.1 [WormBase]
  • pir||T23404 hypothetical protein K07C5.3 - Caenorhabditis elegans [NCBI NR]
  • gi|3878323|emb|CAA94896.1| C. elegans protein K07C5.3, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17562294|ref|NP_505659.1| hypothetical protein K07C5.3 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE06113 WBGene00010626 DNA ligase like domain status:Confirmed TR:Q21275 protein_id:CAA94896.1 [wormpep150.fasta]
  • 06113 WBGene00010626 DNA ligase like domain status:Confirmed TR:Q21275 protein_id:CAA94896.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • ligase III DNA (56.5 kD) (5K825) [Caenorhabditis elegans]gi|3878323|emb|CAA94896.1| Hypothetical protein K07C5.3 [Caenorhabditis elegans]gi|7505424|pir||T23404 hypothetical protein K07C5.3 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • DNA ligase like domain status:Partially_confirmed TR:Q21275 protein_id:CAA94896.1 [wormpep115.fasta.reversed]
  • CE06113 DNA ligase like domain status:Partially_confirmed TR:Q21275 protein_id:CAA94896.1 [wormpep80.hongbin]
  • CE06113 WBGene00010626 DNA ligase like domain status:Confirmed UniProt:Q21275_CAEEL protein_id:CAA94896.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE06113 WBGene00010626 DNA ligase like domain status:Confirmed UniProt:Q21275_CAEEL protein_id:CAA94896.1| [wormORF-contam.fasta]
  • Hypothetical protein K07C5.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • K07C5.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE06113 WBGene00010626 DNA ligase like domain status:Confirmed UniProt:Q21275 protein_id:CAA94896.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE06113 WBGene00010626 status:Confirmed UniProt:Q21275 protein_id:CAA94896.1 [wormpep246-ecoli-contam.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=CELE_K07C5.3 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 493 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: DNA repair [IEALink to PubMed article]
    DNA replication [IEALink to PubMed article]
    DNA recombination [IEALink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSAPPRFC TDYAKRVAKC QKCKMQLEKG VLRMGKIMPN FFVAAKDPSK PPPDMKQYFH  60
   61 TNCLFEMLFK ARPTTKVIDE TDEIEGFEDL NAEDQDEIKK LVDELAEKRS KDGPAEPKKT 120
  121 PAKKKTEEKE EKGDVEATPS RKRKNEETLK SKRPTEFNEE SDFNSFYKFV KVCSVLKEIS 180
  181 VKSEKSAVIT SLLQKKNFDG DLMLWLTFLI RESDQRSYNI TDEKLIQYFA KILDMGESKI 240
  241 QKYVTKSNDI ALSISHAHEK KVTNEKGKWS LQKLDRYLEK LSKIEDDDAI LSHLKFAAKR 300
  301 MRHDELDILI RLIRKELDTD ADASIILKGV HPKAPEIFQS NGLDSVIEKY YNNDFEKSAQ 360
  361 QKTSSSKNKV AEPSFKKSKR QEESDDEESD VEMSNSESEG DQDSDSGSDN EEEISGSDSD 420
  421 DVSEISSDDE EESSFKENSP KKVARGTRTR PRGNDGNIIQ KEECPPDMEA CRYGEKCYRK 480
  481 NKDHLDSFWH PAH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] PSI-BLAST 30.0 Solution structure of the zinc-finger domain from DNA ligase IIIa
    2 View Details [120..493] PSI-BLAST 78.69897 Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.270879137859077 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle