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Protein Overview: sel-11

General Information:
Name(s) found: sel-11 / CE05945 [WormBase]
Description(s) found:
Found 20 descriptions.
SHOW ALL
  • WBGene00004768 locus:sel-11 E3 ubiquitin-protein ligase hrd-1 status:Confirmed UniProt:Q20798 protein_id:CAA96657.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 610 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of Notch signaling pathway [IGILink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVSAGLMIG GSCVATAATI LNAFLINKQF YPSIVYLSKS NASMAVIYVQ GIVLVYLMFQ  60
   61 LLKSILFGDL RAAEAEHLSE RTWHAVLETC LAFTVFRDDF SAIFVMQFIG LLFIKCFHWL 120
  121 ADDRVDMMER SPVITLRFHL RMMTVLAALG FADSYFVSSA YFTTITRGAS AQIVFGFEYA 180
  181 ILLALVLHVT IKYLLHMHDL RNPQSWDNKA VYLLYAELFI NLIRCLLYGF FAVVMLRVHT 240
  241 FPLFSVRPFY QSVRALHKAF LDVILSRRAI NAMNSQFPVV SAEDLAAMDA TCIICREEMT 300
  301 VDASPKRLPC SHVFHAHCLR SWFQRQQTCP TCRTDIWQGR NGAAAGGNAA DAAANVADAN 360
  361 VAGAQIGAGM PPFLPFLGHQ FGFPQQPAGA GGAQPGAAQA GGQPGPFPHQ IFYAPAPANR 420
  421 PEFMNLIPPP PLPMAGPPGM FPMMPPPPLP QVNTTQGTSS ETPPVNPSYS QLSTEELRRM 480
  481 EGESREALLA RLQAMDNIMV LLESAQMQMI QLATVTPIRP RPVVPSDESE QEAPGPSTDQ 540
  541 VTSEEQEIPA TSSAPSIFRT ESPSTSSTAP STSSPVTASS TPTTSSTRTP EAEEVRQRRL 600
  601 ARLLGENANQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..211] MSA 2.107953 View MSA. No confident structure predictions are available.
    2 View Details [212..333] FFAS03 2.75 Crystal Structure of The Cand1-Cul1-Roc1 Complex
    3 View Details [334..610] PSI-BLAST 7.0 No description for 1y0fB was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.94076497669492 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.668196536186663 bayes_pls_golite062009
  • protein binding
    		•  0.667634857392466 bayes_pls_golite062009
  • catalytic activity
    		•  0.539151326702765 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29405687339606 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle