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Protein Overview: sqt-3

General Information:
Name(s) found: sqt-3 / CE05707 [WormBase]
Description(s) found:
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  • WBGene00005018 locus:sqt-3 Cuticle collagen 1 status:Confirmed UniProt:P08124 protein_id:CAA98942.1 [WormBase]
  • gi|7499772|pir||T21314 hypothetical protein F23H12.4 - Caenorhabditis elegans [NCBI NR]
  • gi|3876307|emb|CAA98942.1| C. elegans protein F23H12.4, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|205462078|sp|P08124.2|COL1_CAEEL RecName: Full=Cuticle collagen 1; AltName: Full=Protein squat-3; AltName: Full=Protein dumpy-15; Flags: Precursor [NCBI NR]
  • gi|17563290|ref|NP_506095.1| SQuaT family member (sqt-3) [Caenorhabditis elegans] [NCBI NR]
  • Cuticle collagen 1 OS=Caenorhabditis elegans GN=sqt-3 PE=3 SV=2 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE05707 WBGene00005018 locus:sqt-3 collagen status:Confirmed [wormpep150.fasta]
  • 05707 WBGene00005018 locus:sqt-3 collagen status:Confirmed [wormpep130-phg-ecoli-orf-rand.fasta]
  • COLlagen structural gene, SQuaT SQT-3, DumPY : shorter than wild-type DPY-15 (29.2 kD) (sqt-3) [Caenorhabditis elegans]gi|3876307|emb|CAA98942.1| Hypothetical protein F23H12.4 [Caenorhabditis elegans]gi|7499772|pir||T21314 hypothetical protein F23H12.4 [nrdb_11152004_Chlamydomonas]
  • locus:sqt-3 collagen status:Partially_confirmed SW:P08124 protein_id:CAA98942.1 [wormpep115.fasta.reversed]
  • CE05707 locus:sqt-3 collagen status:Partially_confirmed TR:Q19763 protein_id:CAA98942.1 [wormpep80.hongbin]
  • CE05707 WBGene00005018 locus:sqt-3 collagen status:Confirmed UniProt:P08124 protein_id:CAA98942.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05707 WBGene00005018 locus:sqt-3 collagen status:Confirmed UniProt:P08124 protein_id:CAA98942.1| [wormORF-contam.fasta]
  • hypothetical protein F23H12.4 - Caenorhabditis elegans [nr-271106-contam.fasta]
  • F23H12.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F23H12.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05707 WBGene00005018 locus:sqt-3 status:Confirmed UniProt:P08124 protein_id:CAA98942.1 Cuticle collagen 1 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 301 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    collagen and cuticulin-based cuticle development [IMPLink to PubMed article]
    phosphate transport [IEALink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: structural constituent of cuticle [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METDGRLKAY KFVAYAAVGF SIAAVASVLL TLPMVYSYVS HVRQQMHHEI NFCKGSAKDI  60
   61 FAEVNYMKAN AGPVPPRNRT TRQAYGGPEV NPAPNLQCEG CCLPGPPGPA GAPGKPGKPG 120
  121 RPGAPGTPGT PGKPPVAPCE PTTPPPCKPC PQGPPGPPGP PGAPGDPGEA GTPGRPGTDA 180
  181 APGSPGPRGP PGPAGEAGAP GPAGEPGTPA ISEPLTPGAP GEPGDSGPPG PPGPPGAPGN 240
  241 DGPPGPPGPK GAPGPDGPPG VDGQSGPPGP PGPAGTPGEK GICPKYCALD GGVFFEDGTR 300
  301 R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..301] PSI-BLAST 29.0 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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