YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sqt-3
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METDGRLKAY KFVAYAAVGF SIAAVASVLL TLPMVYSYVS HVRQQMHHEI NFCKGSAKDI  60
   61 FAEVNYMKAN AGPVPPRNRT TRQAYGGPEV NPAPNLQCEG CCLPGPPGPA GAPGKPGKPG 120
  121 RPGAPGTPGT PGKPPVAPCE PTTPPPCKPC PQGPPGPPGP PGAPGDPGEA GTPGRPGTDA 180
  181 APGSPGPRGP PGPAGEAGAP GPAGEPGTPA ISEPLTPGAP GEPGDSGPPG PPGPPGAPGN 240
  241 DGPPGPPGPK GAPGPDGPPG VDGQSGPPGP PGPAGTPGEK GICPKYCALD GGVFFEDGTR 300
  301 R

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	36	0.88
Non-Cytoplasmic	37	301	0.95