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Protein Overview: CE05656

General Information:
Name(s) found: CE05656 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00008920 locus:eef-1G Probable elongation factor 1-gamma status:Confirmed UniProt:P54412 protein_id:CAA96631.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 398 amino acids

    Gene Ontology:
    Cellular Component: eukaryotic translation elongation factor 1 complex [IEALink to PubMed article]
    Biological Process: positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    translational elongation [IEALink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: translation elongation factor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGKLYGNKD NFRTQKVLIA AKLANKTVTL AGDAAPADKF PLGVTPAFEG DALLFGAESI  60
   61 GLHLTGTSAN AETVQWLQFA EGYLLPAVLG YVLPSVSAAN FDKKTVEQYK NELNGQLQVL 120
  121 DRVLVKKTYL VGERLSLADV SVALDLLPAF QYVLDANARK SIVNVTRWFR TVVNQPAVKE 180
  181 VLGEVSLASS VAQFNQAKFT ELSAKVAKSA PKAEKPKKEA KPAAAAAQPE DDEPKEEKSK 240
  241 DPFQDMPKGT FVLDNFKRSY SNEDTATKAI PHFWENFDAD NWSIWKCEYK YPEDLTLAFM 300
  301 SCNLINGMYQ RLEKLKKNAF ASMILFGTDN NSTISGIWVW KGDKLAFELS PDWQVDYESY 360
  361 TWTKLDAKSD ATKKEVNEYL MWEGDFGGKK FNQGKIFK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] PSI-BLAST 35.09691 STRUCTURE OF GLUTATHIONE S-TRANSFERASE III IN APO FORM
    2 View Details [191..398] PSI-BLAST 71.69897 Elongation factor 1-gamma C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.30799114442278 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.06381591939564 bayes_pls_golite062009
  • DNA binding
    		•  1.92118545500784 bayes_pls_golite062009
  • binding
    		•  1.25802922431343 bayes_pls_golite062009
  • transcription activator activity
    		•  1.23146660729357 bayes_pls_golite062009
  • protein binding
    		•  1.18479617596618 bayes_pls_golite062009
  • catalytic activity
    		•  0.672192331361968 bayes_pls_golite062009
  • RNA binding
    		•  0.382017633056715 bayes_pls_golite062009
    		• 0.359224524631956 bayes_pls_golite062009
  • receptor binding
    		•  0.0497559408754589 bayes_pls_golite062009
    2
    Term Confidence Notes
  • translation elongation factor activity
    		•  11.9602302019768 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  7.4644014407268 bayes_pls_golite062009
  • translation regulator activity
    		•  7.42485540728491 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.9329721501879 bayes_pls_golite062009
  • binding
    		•  3.0325775548747 bayes_pls_golite062009
  • protein binding
    		•  1.65598815428763 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle