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Protein Overview: CE05595

General Information:
Name(s) found: CE05595 [WormBase]
Description(s) found:
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  • WBGene00008722 Probable DNA polymerase delta small subunit status:Confirmed UniProt:Q19366 protein_id:CAA97785.1 [WormBase]
  • pir||T20798 hypothetical protein F12F6.7 - Caenorhabditis elegans [NCBI NR]
  • gi|3875793|emb|CAA97785.1| C. elegans protein F12F6.7, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17539782|ref|NP_502177.1| hypothetical protein F12F6.7 [Caenorhabditis elegans] [NCBI NR]
  • gi|13431470|sp|Q19366.1|DPOD2_CAEEL RecName: Full=Probable DNA polymerase delta small subunit [NCBI NR]
  • Probable DNA polymerase delta small subunit OS=Caenorhabditis elegans GN=F12F6.7 PE=3 SV=1 [Swiss-Prot]
  • (Q19366) Preobable DNA polymerase delta small subunit (EC 2.7.7.7) [Swiss-Prot]
  • [wormpep67.fasta]
  • CE05595 WBGene00008722 Yeast HUS2 protein like status:Confirmed SW:Q19366 protein_id:CAA97785.1 [wormpep150.fasta]
  • 05595 WBGene00008722 Yeast HUS2 protein like status:Confirmed SW:Q19366 protein_id:CAA97785.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • polymerase delta (50.4 kD) (4M324) [Caenorhabditis elegans]gi|3875793|emb|CAA97785.1| Hypothetical protein F12F6.7 [Caenorhabditis elegans]gi|7498961|pir||T20798 hypothetical protein F12F6.7 - Caenorhabditis elegansgi|13431470|sp|Q19366|DPD2_CAEEL Preo [nrdb_11152004_Chlamydomonas]
  • Yeast HUS2 protein like status:Confirmed SW:Q19366 protein_id:CAA97785.1 [wormpep115.fasta.reversed]
  • CE05595 Yeast HUS2 protein like status:Confirmed SW:Q19366 protein_id:CAA97785.1 [wormpep80.hongbin]
  • CE05595 WBGene00008722 Yeast HUS2 protein like status:Confirmed UniProt:Q19366 protein_id:CAA97785.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05595 WBGene00008722 Yeast HUS2 protein like status:Confirmed UniProt:Q19366 protein_id:CAA97785.1| [wormORF-contam.fasta]
  • F12F6.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Probable DNA polymerase delta small subunit [nr-271106-contam.fasta]
  • Hypothetical protein F12F6.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05595 WBGene00008722 status:Confirmed UniProt:Q19366 protein_id:CAA97785.1 Probable DNA polymerase delta small subunit [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 451 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    DNA replication [IEALink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]
    DNA-directed DNA polymerase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METAWSNILN YKNVSDRYIL TEKDKKGAFT RQYFEVYEAR LKELKPRILE NAEREIGKGK  60
   61 FTHSQLSDAK QDEEIFVVGV IVKRIAARPS ILKSLLNEDK VAYDDYEEDA EEDEVKRYAG 120
  121 SIEDRIELES DKQTVRLEGN ISMDECATGC CVGVLGKLGK EGVFHVNRLV WPSVKVPKKV 180
  181 AVDGTIAFVS GLDLTGDLED DRLTISGLEF MADWMNVQVG NENQCPPIDR LVVIGPLVET 240
  241 KSNGCDVQSV VRTLTLSRAE KHSSTASLIT VDKIINSIAE KPLVNTVDVT PGVGDPCSSM 300
  301 WPLPPIHRVC LPRCGMSDKK VNLVTNPYEF EVNGLRVMTM SGENVSELLR TSLKWTGADA 360
  361 IENIIKWQHV APNCPDTLDA FPVAERDPLI MDITPHVIIC GNQPHAEFRH IPIDGSNCLV 420
  421 VCLPKFSKTR VACFLNLSDL SLKWQNFDHQ F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] MSA 1.138992 View MSA. No confident structure predictions are available.
    2 View Details [184..451] FFAS03 1.25 No description for 2yvtA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • hydrolase activity
    		•  2.89784024382425 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.54644459918406 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.75775204356118 bayes_pls_golite062009
  • transferase activity
    		•  1.71554219929081 bayes_pls_golite062009
  • binding
    		•  1.30309680165893 bayes_pls_golite062009
  • catalytic activity
    		•  1.30037658165549 bayes_pls_golite062009
  • protein serine/threonine phosphatase activity
    		•  1.17916462117542 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  0.950264524479969 bayes_pls_golite062009
  • phosphatase activity
    		•  0.829761417192212 bayes_pls_golite062009
  • phosphoprotein phosphatase activity
    		•  0.768201004870964 bayes_pls_golite062009
  • structural molecule activity
    		•  0.211411396269789 bayes_pls_golite062009
  • protein binding
    		•  0.20380491058914 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle