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Protein Overview: his-35

General Information:
Name(s) found: his-35 / CE05477 [WormBase]
Description(s) found:
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  • WBGene00001909 locus:his-35 Histone H2A status:Confirmed UniProt:Q27485 protein_id:CAA94747.1 [WormBase]
  • pir||T20119 hypothetical protein C50F4.13 - Caenorhabditis elegans [NCBI NR]
  • gi|3875130|emb|CAA94747.1| C. elegans protein C50F4.13, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17562014|ref|NP_505463.1| HIStone family member (his-35) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE05477 WBGene00001909 locus:his-35 histone H2A status:Confirmed TR:Q27485 protein_id:CAA94747.1 [wormpep150.fasta]
  • 05477 WBGene00001909 locus:his-35 histone H2A status:Confirmed TR:Q27485 protein_id:CAA94747.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • histone (13.4 kD) (his-35) [Caenorhabditis elegans]gi|3875130|emb|CAA94747.1| Hypothetical protein C50F4.13 [Caenorhabditis elegans]gi|7497770|pir||T20119 hypothetical protein C50F4.13 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:his-35 histone H2A status:Confirmed TR:Q27485 protein_id:CAA94747.1 [wormpep115.fasta.reversed]
  • CE05477 locus:his-35 histone H2A status:Confirmed TR:Q27485 protein_id:CAA94747.1 [wormpep80.hongbin]
  • CE05477 WBGene00001909 locus:his-35 histone H2A status:Confirmed UniProt:Q27485_CAEEL protein_id:CAA94747.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05477 WBGene00001909 locus:his-35 histone H2A status:Confirmed UniProt:Q27485_CAEEL protein_id:CAA94747.1| [wormORF-contam.fasta]
  • HIStone family member (his-35) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C50F4.13 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE05477 WBGene00001909 locus:his-35 histone H2A status:Confirmed UniProt:Q27485 protein_id:CAA94747.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05477 WBGene00001909 locus:his-35 status:Confirmed UniProt:Q27485 protein_id:CAA94747.1 Histone H2A [wormpep246-ecoli-contam.fasta]
  • Histone H2A OS=Caenorhabditis elegans GN=his-35 PE=3 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 127 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    nucleosome [IEALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    nucleosome assembly [IEALink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRGKGGKA KTGGKAKSRS SRAGLQFPVG RLHRILRKGN YAQRVGAGAP VYLAAVLEYL  60
   61 AAEVLELAGN AARDNKKTRI APRHLQLAVR NDEELNKLLA GVTIAQGGVL PNIQAVLLPK 120
  121 KTAGDKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] PSI-BLAST 42.522879 No description for 2f8nK was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.581886805340955 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle