YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: sod-5

General Information:
Name(s) found: sod-5 / CE05080 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00007036 locus:sod-5 Superoxide dismutase [Cu-Zn] status:Confirmed UniProt:Q27538 protein_id:CCD61672.1 [WormBase]
  • pir||T27860 probable superoxide dismutase (EC 1.15.1.1) (Cu-Zn) [similarity] - Caenorhabditis elegans [NCBI NR]
  • gi|17537871|ref|NP_494779.1| SOD (superoxide dismutase) family member (sod-5) [Caenorhabditis elegans] [NCBI NR]
  • gi|1125751|gb|AAA83577.1| Sod (superoxide dismutase) protein 5 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE05080 WBGene00007036 locus:sod-5 superoxide dismutase status:Confirmed TR:Q27538 protein_id:AAA83577.1 [wormpep150.fasta]
  • 05080 WBGene00007036 locus:sod-5 superoxide dismutase status:Confirmed TR:Q27538 protein_id:AAA83577.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • dismutase (18.5 kD) (2E709) [Caenorhabditis elegans]gi|1125751|gb|AAA83577.1| Sod (superoxide dismutase) protein 5 [Caenorhabditis elegans]gi|7511144|pir||T27860 probable superoxide dismutase (EC 1.15.1.1) (Cu-Zn) [similarity] - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • superoxide dismutase status:Confirmed TR:Q27538 protein_id:AAA83577.1 [wormpep115.fasta.reversed]
  • CE05080 superoxide dismutase status:Confirmed TR:Q27538 protein_id:AAA83577.1 [wormpep80.hongbin]
  • CE05080 WBGene00007036 locus:sod-5 superoxide dismutase status:Confirmed UniProt:Q27538_CAEEL protein_id:AAA83577.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05080 WBGene00007036 locus:sod-5 superoxide dismutase status:Confirmed UniProt:Q27538_CAEEL protein_id:AAA83577.1| [wormORF-contam.fasta]
  • Sod (superoxide dismutase) protein 5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • SOD (superoxide dismutase) family member (sod-5) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05080 WBGene00007036 locus:sod-5 superoxide dismutase status:Confirmed UniProt:Q27538 protein_id:AAA83577.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE05080 WBGene00007036 locus:sod-5 superoxide dismutase status:Confirmed UniProt:Q27538 protein_id:CCD61672.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE05080 WBGene00007036 locus:sod-5 status:Confirmed UniProt:Q27538 protein_id:CCD61672.1 Superoxide dismutase [Cu-Zn] [wormpep246-ecoli-contam.fasta]
  • Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-5 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 178 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: copper ion transport [IEALink to PubMed article]
    superoxide metabolic process [IEALink to PubMed article]
    Molecular Function: copper ion binding [IEALink to PubMed article]
    metal ion binding [IEALink to PubMed article]
    copper ion transmembrane transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDILSDIANA VLPQDVVSKV ESKRAVAVLR GTAVFGTVWL TQKAEGEETE FEGEIKGLSP  60
   61 GLHGFHIHQY GDSTDGCTSA GPHFNPCKMN HGGRDSVVRH VGDLGNVEAG ADGVAKIKFS 120
  121 DKVVSLFGAN TVIGRSMVVH VDRDDLGQGI DDKAEESLKT GNAGARAACG VIALAAPA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..178] PSI-BLAST 48.0 Cu,Zn superoxide dismutase, SOD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein phosphatase 2B binding
    		•  13.5719110466797 bayes_pls_golite062009
  • superoxide dismutase activity
    		•  12.1093323949609 bayes_pls_golite062009
  • oxidoreductase activity, acting on superoxide radicals as acceptor
    		•  12.1093323949609 bayes_pls_golite062009
  • chaperone binding
    		•  5.11696266714142 bayes_pls_golite062009
  • superoxide dismutase copper chaperone activity
    		•  4.90125496493753 bayes_pls_golite062009
  • copper ion binding
    		•  4.51765925795625 bayes_pls_golite062009
  • protein phosphatase binding
    		•  3.26481550276071 bayes_pls_golite062009
  • phosphatase binding
    		•  3.1414149853516 bayes_pls_golite062009
  • transition metal ion binding
    		•  2.451533032488 bayes_pls_golite062009
  • binding
    		•  2.28211284921339 bayes_pls_golite062009
  • protein binding
    		•  1.96660745768497 bayes_pls_golite062009
  • enzyme binding
    		•  1.82618630359051 bayes_pls_golite062009
  • cation binding
    		•  1.79413011653575 bayes_pls_golite062009
  • metal ion binding
    		•  1.79413011653575 bayes_pls_golite062009
  • ion binding
    		•  1.78699219376941 bayes_pls_golite062009
  • catalytic activity
    		•  1.09233965765942 bayes_pls_golite062009
  • copper ion transmembrane transporter activity
    		•  0.658369569046781 bayes_pls_golite062009
  • metallochaperone activity
    		•  0.515959593535099 bayes_pls_golite062009
  • copper chaperone activity
    		•  0.412497194733789 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.32642292951469 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.262312399748454 bayes_pls_golite062009
  • zinc ion binding
    		•  0.25600715352161 bayes_pls_golite062009
  • antioxidant activity
    		•  0.240491838042064 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle