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View Structure Prediction Details

Protein: sod-5
Organism: Caenorhabditis elegans
Length: 178 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sod-5.

Description E-value Query
Range		 Subject
Range
gi|157750408 - gi|157750408|ref|XP_001678917.1| Hypothetical protein CBG11197 [Caenorhabditis briggsae AF16]
SODC_CAEBR - Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1
 210.0 [0..1] [177..3]
gi|5353561 - gi|5353561|gb|AAD42179.1| superoxide dismutase/HCV major epitope fusion protein [synthetic construct...
 210.0 [0..21] [175..1]
sod-1 - superoxide dismutase status:Confirmed UniProt:P34697 protein_id:AAF39759.1
 207.0 [0..1] [177..3]
SODC_BRUPA - Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1
 197.0 [0..21] [176..1]
gi|4376168 - gi|4376168|emb|CAA09027.1| extracellular copper/zinc superoxide dismutase [Acanthocheilonema viteae]
 196.0 [0..23] [177..40]
SODC_MACMU - Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3
SODC_MACFA - Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3
gi|23503516 - gi|23503516|dbj|BAC20348.1| Cu,Zn-superoxide dismutase [Macaca fuscata]
SODC_MACFU - Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3
 195.0 [0..21] [175..1]
gi|37992941 - gi|37992941|gb|AAR06638.1| superoxide dismutase [Brugia malayi]
 195.0 [0..21] [176..1]
gi|74229679 - gi|74229679|gb|ABA00454.1| chloroplast Cu/ZnSOD [Gossypium hirsutum]
 195.0 [0..2] [174..81]
SODC_ONCVO - Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1
 195.0 [0..21] [176..1]

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Predicted Domain #1
Region A:
Residues: [1-178] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDILSDIANA VLPQDVVSKV ESKRAVAVLR GTAVFGTVWL TQKAEGEETE FEGEIKGLSP  60
   61 GLHGFHIHQY GDSTDGCTSA GPHFNPCKMN HGGRDSVVRH VGDLGNVEAG ADGVAKIKFS 120
  121 DKVVSLFGAN TVIGRSMVVH VDRDDLGQGI DDKAEESLKT GNAGARAACG VIALAAPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.0
Match: 1n18A
Description: Cu,Zn superoxide dismutase, SOD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein phosphatase 2B binding 13.5719110466797 bayes_pls_golite062009
superoxide dismutase activity 12.1093323949609 bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor 12.1093323949609 bayes_pls_golite062009
chaperone binding 5.11696266714142 bayes_pls_golite062009
superoxide dismutase copper chaperone activity 4.90125496493753 bayes_pls_golite062009
copper ion binding 4.51765925795625 bayes_pls_golite062009
protein phosphatase binding 3.26481550276071 bayes_pls_golite062009
phosphatase binding 3.1414149853516 bayes_pls_golite062009
transition metal ion binding 2.451533032488 bayes_pls_golite062009
binding 2.28211284921339 bayes_pls_golite062009
protein binding 1.96660745768497 bayes_pls_golite062009
enzyme binding 1.82618630359051 bayes_pls_golite062009
cation binding 1.79413011653575 bayes_pls_golite062009
metal ion binding 1.79413011653575 bayes_pls_golite062009
ion binding 1.78699219376941 bayes_pls_golite062009
catalytic activity 1.09233965765942 bayes_pls_golite062009
copper ion transmembrane transporter activity 0.658369569046781 bayes_pls_golite062009
metallochaperone activity 0.515959593535099 bayes_pls_golite062009
copper chaperone activity 0.412497194733789 bayes_pls_golite062009
ion transmembrane transporter activity 0.32642292951469 bayes_pls_golite062009
cation transmembrane transporter activity 0.262312399748454 bayes_pls_golite062009
zinc ion binding 0.25600715352161 bayes_pls_golite062009
antioxidant activity 0.240491838042064 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle