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Protein Overview: dpy-13

General Information:
Name(s) found: dpy-13 / CE04462 [WormBase]
Description(s) found:
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  • WBGene00001074 locus:dpy-13 Cuticle collagen dpy-13 status:Confirmed UniProt:P17657 protein_id:CCD70270.1 [WormBase]
  • pir||A31921 collagen dpy-13 precursor - Caenorhabditis elegans [NCBI NR]
  • gi|17539566|ref|NP_500519.1| DumPY : shorter than wild-type family member (dpy-13) [Caenorhabditis elegans] [NCBI NR]
  • gi|156270|gb|AAA27994.1| collagen [NCBI NR]
  • gi|115411|sp|P17657.2|DPY13_CAEEL RecName: Full=Cuticle collagen dpy-13; AltName: Full=Protein dumpy-13 [NCBI NR]
  • gi|1123099|gb|AAA83499.1| Dumpy : shorter than wild-type protein 13 [Caenorhabditis elegans] [NCBI NR]
  • Cuticle collagen dpy-13 OS=Caenorhabditis elegans GN=dpy-13 PE=1 SV=2 [Swiss-Prot]
  • (P17657) Cuticle collagen dpy-13 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE04462 WBGene00001074 locus:dpy-13 cuticular collagen status:Confirmed SW:P17657 protein_id:AAA83499.1 [wormpep150.fasta]
  • 04462 WBGene00001074 locus:dpy-13 cuticular collagen status:Confirmed SW:P17657 protein_id:AAA83499.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • DumPY : shorter than wild-type DPY-13, collagen family member (30.1 kD) (dpy-13) [Caenorhabditis elegans]gi|1123099|gb|AAA83499.1| Dumpy : shorter than wild-type protein 13 [Caenorhabditis elegans]gi|84436|pir||A31921 collagen dpy-13 precursor - Caenorh [nrdb_11152004_Chlamydomonas]
  • locus:dpy-13 cuticular collagen status:Confirmed SW:P17657 protein_id:AAA83499.1 [wormpep115.fasta.reversed]
  • CE04462 locus:dpy-13 cuticular collagen status:Confirmed [wormpep80.hongbin]
  • CE04462 WBGene00001074 locus:dpy-13 cuticular collagen status:Confirmed UniProt:P17657 protein_id:AAA83499.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE04462 WBGene00001074 locus:dpy-13 cuticular collagen status:Confirmed UniProt:P17657 protein_id:AAA83499.1| [wormORF-contam.fasta]
  • Cuticle collagen dpy-13 (Protein dumpy-13) [nr-271106-contam.fasta]
  • Dumpy : shorter than wild-type protein 13 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • collagen [nr-271106-contam.fasta]
  • DumPY : shorter than wild-type family member (dpy-13) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE04462 WBGene00001074 locus:dpy-13 cuticular collagen status:Confirmed UniProt:P17657 protein_id:CCD70270.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE04462 WBGene00001074 locus:dpy-13 status:Confirmed UniProt:P17657 protein_id:CCD70270.1 Cuticle collagen dpy-13 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 302 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    extracellular matrix part [IDALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    phosphate transport [IEALink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    Molecular Function: structural constituent of cuticle [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIDTKIKAY RFVAYSAVVF SVIAVLSVCI TLPIVYNYVH TVRRQLHNEA LTCKGSMKDV  60
   61 WADVHHLRVD AASNRTARAV RYGRDDAAAG NGPNFDSGCE GCCQPGPQGA PGAPGKPGRP 120
  121 GKPGAPGFPG NPGKAPQKPC EEITPPPCKP CPQGPPGAPG LPGDQGDKGE AGQPGQPGSD 180
  181 AAPGEQGPKG PNGAPGKPGA PGAPGDEGLP AVCEPVQKGE PGSTGEPGPV GPPGPSGQPG 240
  241 NDGTPGQPGP KGPPGPDGKP GADGNPGQPG PVGPPGTPGE RGICPKYCAI DGGIFFEDGT 300
  301 RR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..302] PSI-BLAST 27.30103 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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