YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dpy-13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIDTKIKAY RFVAYSAVVF SVIAVLSVCI TLPIVYNYVH TVRRQLHNEA LTCKGSMKDV  60
   61 WADVHHLRVD AASNRTARAV RYGRDDAAAG NGPNFDSGCE GCCQPGPQGA PGAPGKPGRP 120
  121 GKPGAPGFPG NPGKAPQKPC EEITPPPCKP CPQGPPGAPG LPGDQGDKGE AGQPGQPGSD 180
  181 AAPGEQGPKG PNGAPGKPGA PGAPGDEGLP AVCEPVQKGE PGSTGEPGPV GPPGPSGQPG 240
  241 NDGTPGQPGP KGPPGPDGKP GADGNPGQPG PVGPPGTPGE RGICPKYCAI DGGIFFEDGT 300
  301 RR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	36	0.89
Non-Cytoplasmic	37	302	0.94