Protein Overview: CE04010

General Information:
Name(s) found:	CE04010 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00015814 Probable ornithine aminotransferase, mitochondrial status:Confirmed UniProt:Q18040 protein_id:CCD63230.1 [WormBase] pir\|\|G88481 protein C16A3.9 [imported] - Caenorhabditis elegans [NCBI NR] gi\|25144271\|ref\|NP_741194.1\| hypothetical protein C16A3.10 [Caenorhabditis elegans] [NCBI NR] gi\|21264470\|sp\|Q18040.3\|OAT_CAEEL RecName: Full=Probable ornithine aminotransferase, mitochondrial; AltName: Full=Ornithine--oxo-acid aminotransferase; Flags: Precursor [NCBI NR] gi\|14573806\|gb\|AAD31050.2\|U41534_10 Hypothetical protein C16A3.10a [Caenorhabditis elegans] [NCBI NR] Probable ornithine aminotransferase, mitochondrial OS=Caenorhabditis elegans GN=C16A3.10 PE=3 SV=3 [Swiss-Prot] [wormpep67.fasta] CE04010 WBGene00015814 ornithine aminotransferse precursor status:Confirmed SW:Q18040 protein_id:AAD31050.2 [wormpep150.fasta] 04010 WBGene00015814 ornithine aminotransferse precursor status:Confirmed SW:Q18040 protein_id:AAD31050.2 [wormpep130-phg-ecoli-orf-rand.fasta] ornithine aminotransferase (46.5 kD) (3H484) [Caenorhabditis elegans]gi\|14573806\|gb\|AAD31050.2\| Hypothetical protein C16A3.10a [Caenorhabditis elegans]gi\|25287238\|pir\|\|G88481 protein C16A3.9 [imported] - Caenorhabditis elegansgi\|21264470\|sp\|Q18040\|OAT_ [nrdb_11152004_Chlamydomonas] ornithine aminotransferse precursor status:Partially_confirmed SW:Q18040 protein_id:AAD31050.2 [wormpep115.fasta.reversed] CE04010 ornithine aminotransferse precursor status:Partially_confirmed SW:Q18040 protein_id:AAD31050.2 [wormpep80.hongbin] CE04010 WBGene00015814 ornithine aminotransferse precursor status:Confirmed UniProt:Q18040 protein_id:AAD31050.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE04010 WBGene00015814 ornithine aminotransferse precursor status:Confirmed UniProt:Q18040 protein_id:AAD31050.2\| [wormORF-contam.fasta] Probable ornithine aminotransferase, mitochondrial precursor (Ornithine--oxo-acid aminotransferase) [nr-271106-contam.fasta] C16A3.10a [Caenorhabditis elegans] [nr-271106-contam.fasta] Hypothetical protein C16A3.10a [Caenorhabditis elegans] [nr-271106-contam.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE04010 WBGene00015814 ornithine aminotransferse precursor status:Confirmed UniProt:Q18040 protein_id:CCD63230.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta] CE04010 WBGene00015814 status:Confirmed UniProt:Q18040 protein_id:CCD63230.1 Probable ornithine aminotransferase, mitochondrial [wormpep246-ecoli-contam.fasta]
Organism:	Caenorhabditis elegans
Length:	422 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	arginine metabolic process [IEA] ectoine biosynthetic process [IEA] tetrapyrrole biosynthetic process [IEA] biosynthetic process [IEA] biotin biosynthetic process [IEA] gamma-aminobutyric acid metabolic process [IEA]
Molecular Function:	pyridoxal phosphate binding [IEA] 4-aminobutyrate transaminase activity [IEA] transaminase activity [IEA] glutamate-1-semialdehyde 2,1-aminomutase activity [IEA] diaminobutyrate-pyruvate transaminase activity [IEA] adenosylmethionine-8-amino-7-oxononanoate transaminase activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSLRRVVP SLPRGSRSLT SQQIFDREKK FGCHNYKPLP VALSKGEGCF VWDVEGKKYF  60
   61 DFLAAYSAVN QGHCHPKLLK VVQEQASTLT LTSRAFYNNV LGEYEEYVTK LFKYDKVLPM 120
  121 NTGVEACESA VKLARRWAYD VKGVKDNEAV VVFAENNFWG RSIAAISAST DPDSFARFGP 180
  181 FVPGFKTVPY NNLKAVEDAI KDKNVAAFMV EPIQGEAGVV LPDPGYLKGV SDLCKKYNVL 240
  241 FITDEVQSGL GRSGKLLAHY HDNVRPDIVV LGKALSGGFY PVSAVLCDDN VMMNIKPGEH 300
  301 GSTYGGNPLA CKVAIAALEI LQEEKLVENS AVMGDLLMSK LKTLPKDIVS TVRGKGLFCA 360
  361 IVINKKYDAW KVCLKLKENG LLAKNTHGDI IRFAPPLCIN KEQVEQAADI IIKTVTDFAK 420
  421 QN

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	hcp-2	hcp2 ip from december	Cheeseman, I.M., et al. (2005)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
4-aminobutyrate transaminase activity	9.08769857759091	bayes_pls_golite062009
succinate-semialdehyde dehydrogenase binding	8.44659094913875	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	3.359406422625	bayes_pls_golite062009
transferase activity	2.59075614411581	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity	1.74778109525713	bayes_pls_golite062009
N-succinyltransferase activity	1.52003194822848	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	1.46601963907552	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	1.46601963907552	bayes_pls_golite062009
N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	1.4383564662931	bayes_pls_golite062009
glutamate decarboxylase activity	1.34215658716536	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.19150094103499	bayes_pls_golite062009
transcription regulator activity	0.977210827616757	bayes_pls_golite062009
nucleic acid binding	0.892872530648552	bayes_pls_golite062009
binding	0.892049641082766	bayes_pls_golite062009
ligase activity	0.827063849687833	bayes_pls_golite062009
DNA binding	0.803965264969424	bayes_pls_golite062009
kynureninase activity	0.777830972119923	bayes_pls_golite062009
carbon-sulfur lyase activity	0.698312655247044	bayes_pls_golite062009
transcription factor activity	0.597417107954964	bayes_pls_golite062009
5-aminolevulinate synthase activity	0.54326874956263	bayes_pls_golite062009
ornithine-oxo-acid transaminase activity	0.311107335626334	bayes_pls_golite062009
N-acyltransferase activity	0.2609065149092	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009
cystathionine beta-lyase activity	0.15938456446406	bayes_pls_golite062009
hydrolase activity	0.158765164178244	bayes_pls_golite062009
amine binding	0.14702601411039	bayes_pls_golite062009
methyltransferase activity	0.103986924428507	bayes_pls_golite062009
sulfurtransferase activity	0.0450490929307473	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.0254276656964899	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.96

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..422]	PSI-BLAST	104.0	Ornithine aminotransferase

Protein Overview: CE04010

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: