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Protein Overview: odr-7

General Information:
Name(s) found: odr-7 / CE03663 [WormBase]
Description(s) found:
Found 31 descriptions.
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  • WBGene00003854 locus:odr-7 Nuclear hormone receptor family member odr-7 status:Confirmed UniProt:P41933 protein_id:CAA92192.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 457 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][IEALink to PubMed article]
    Biological Process: positive chemotaxis [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    positive regulation of transcription from RNA polymerase II promoter [IMPLink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVPDTEGLL IYSYGLMYGS YCMACQMLIP HFQCIPGIFP NFRISTELIK TMTDKLEQPN  60
   61 NNVPQQPWGP FPPAFGGRPS GEQTDGNPGE FDNDAAHQQT APFMTHFFPR IGLQFPDFTE 120
  121 YQRFNGFQRN AFFPNPFGSQ FTGQAFAQSF PLHNSMTTMD GFNLTHAPHP FSTNTNSTKP 180
  181 KDIENTVQST IKHSSENIQD KPPVLSVEYP VKYDSELKFD ANVDFTAVPK QESSDDSTLK 240
  241 NLKKSDQQLQ QPQQFTFPPP LLAEKSFEQP RMREDVLPFH PQFYPAPLDM GTNFKQEMRT 300
  301 PPIDGHIDYR KFDASGKRME FQPPGALHDC QVCLSTHANG LHFGARTCAA CAAFFRRTIS 360
  361 DDKRYVCKRN QRCNNASRDG TGYRKICRSC RMKRCLEIGM LPENVQHKRN RRDSGSPPRK 420
  421 TPFDTFFNGF YPSFQPSGSA AQPITVSSSE SPRHTTN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..205] PSI-BLAST 6.045757 RBP1
    2 View Details [206..326] deduced N/A No confident structure predictions are available.
    3 View Details [327..457] PSI-BLAST 34.221849 Crystal Structure of Vitmain D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response Element


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.51

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle