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Protein Overview: pro-1

General Information:
Name(s) found: pro-1 / CE03583 [WormBase]
Description(s) found:
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  • WBGene00004185 locus:pro-1 Pre-rRNA-processing protein pro-1 status:Partially_confirmed UniProt:Q22006 protein_id:CAA90666.1 [WormBase]
  • pir||T24231 hypothetical protein R166.4 - Caenorhabditis elegans [NCBI NR]
  • gi|74965765|sp|Q22006.1|PRO1_CAEEL RecName: Full=Pre-rRNA-processing protein pro-1; AltName: Full=Proximal proliferation in germline protein 1 [NCBI NR]
  • gi|3879195|emb|CAA90666.1| C. elegans protein R166.4, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17535671|ref|NP_496271.1| PROximal proliferation in germline family member (pro-1) [Caenorhabditis elegans] [NCBI NR]
  • Pre-rRNA-processing protein pro-1 OS=Caenorhabditis elegans GN=pro-1 PE=2 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE03583 WBGene00004185 locus:pro-1 status:Partially_confirmed TR:Q22006 protein_id:CAA90666.1 [wormpep150.fasta]
  • 03583 WBGene00004185 locus:pro-1 status:Partially_confirmed TR:Q22006 protein_id:CAA90666.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • WD-repeat protein 18 (58.5 kD) (2K830) [Caenorhabditis elegans]gi|3879195|emb|CAA90666.1| Hypothetical protein R166.4 [Caenorhabditis elegans]gi|7506765|pir||T24231 hypothetical protein R166.4 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q22006 protein_id:CAA90666.1 [wormpep115.fasta.reversed]
  • CE03583 status:Partially_confirmed TR:Q22006 protein_id:CAA90666.1 [wormpep80.hongbin]
  • CE03583 WBGene00004185 locus:pro-1 status:Partially_confirmed UniProt:Q22006 protein_id:CAA90666.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE03583 WBGene00004185 locus:pro-1 status:Partially_confirmed UniProt:Q22006 protein_id:CAA90666.1| [wormORF-contam.fasta]
  • PROximal proliferation in germline family member (pro-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein R166.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE03583 WBGene00004185 locus:pro-1 status:Partially_confirmed UniProt:Q22006 protein_id:CAA90666.1 Pre-rRNA-processing protein pro-1 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 529 amino acids

    Gene Ontology:
    Cellular Component: nucleoplasm [ISSLink to PubMed article]
    Biological Process: germ cell development [IMPLink to PubMed articleLink to PubMed article]
    gonad development [IMPLink to PubMed articleLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    rRNA processing [IGILink to PubMed article][IMPLink to PubMed article]
    cell migration [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYLGVDTSR IAGTQPLEML LVSSGSPDPH STIIIDPRTG VSSWSYKGSE LQGASTGLVE  60
   61 PLGHDGEHVV ITTKERPLVH VLAVHPKDRF HQKCVLPGPV SAIVSDNSGH FVFMSIKRQL 120
  121 YCWLLSTGEL LSVIDAHYQN ITKIVISDDD SMIFTASKDG AVHGYLVTDL VSADRDHTVA 180
  181 PFRKWASHTL SISDLKITNG SNPRVLSAGA DHIACLHSIS MDSVILKASS DRPLTACAID 240
  241 PAETRIFIGT EVGNIAQINL FQLAPEERDL LVQAGDEHNT KFRVLNGHSD EISRLAINTD 300
  301 GTLLASGDAS GKYCIWEISS HQCLKVSTMR SVINTLRFIP FWKTISGGEH VAKFRPVWDL 360
  361 KREPTKCDRF AIEVSTEFNS DQKHWNDVIE ETIDQLLLES GSKSSAQLQW DAEGPARNEA 420
  421 AKAEKAAENT IKNIITLGDD EDDAPEVGNQ RRKSGKKNKK NRKNQKKNDF EAAVIEKKQV 480
  481 EPIVIDDEEE VNSSLQKKFD ALKAENEKLK EINKQMYEFV AKEIVDSEK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..529] PSI-BLAST 50.69897 Actin interacting protein 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.887599328827258 bayes_pls_golite062009
  • protein binding
    		•  0.400495177398246 bayes_pls_golite062009
  • snoRNA binding
    		•  0.355774735269231 bayes_pls_golite062009
  • RNA binding
    		•  0.10947516858053 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle