YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE03351

General Information:
Name(s) found: CE03351 [WormBase]
Description(s) found:
Found 22 descriptions.
SHOW ALL
  • WBGene00009812 locus:suca-1 Probable succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial status:Confirmed UniProt:P53588 protein_id:CAA91981.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 435 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: metabolic process [IEALink to PubMed article]
    Molecular Function: catalytic activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGRISQPLL NTSQKFMAPA ARTLMLHEHH GMKILQNYEI KVPPFGVAQD AETAFSEAKR  60
   61 IGGKDYVVKA QVLAGGRGKG RFSSGLQGGV QIVFTPDEVK QKAGMMIGAN LITKQTDHRG 120
  121 KKCEEVMVCK RLFTRREYYF SITLDRNTNG PIVIASSQGG VNIEEVAATN PDAIVKMPID 180
  181 VNVGITKELA HEIAVKMGFS KDCEQQASEI IEKLYQMFKG SDATLVEINP MAEDVNGDVY 240
  241 CMDCKLLLDS NAEFRQAKLF DLKDKKQEDE LEIRAAAANL NYIRLDGTIG CMVNGAGLAM 300
  301 ATMDIIKLHG GEPANFLDVG GGATVEQVTE AFKIITADKD KVSAILVNIF GGIMRCDVIA 360
  361 QGIIQAAREL DLKIPIVVRL QGTKVEDAKA LIATSQLRIL PCDNLDEAAK MVVKLSNIVD 420
  421 LARATNVDVK FELSI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..435] PSI-BLAST 93.522879 Crystal structure of pig GTP-specific succinyl-CoA synthetase in complex with GTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • succinate-CoA ligase (GDP-forming) activity
    		•  9.38156037766008 bayes_pls_golite062009
  • succinate-CoA ligase activity
    		•  9.37213380498009 bayes_pls_golite062009
  • CoA-ligase activity
    		•  8.19630272128785 bayes_pls_golite062009
  • acid-thiol ligase activity
    		•  7.98453115335343 bayes_pls_golite062009
  • succinate-CoA ligase (ADP-forming) activity
    		•  7.27105019329796 bayes_pls_golite062009
  • ligase activity, forming carbon-sulfur bonds
    		•  7.23103788464777 bayes_pls_golite062009
  • ligase activity
    		•  3.25077459445999 bayes_pls_golite062009
  • ATP citrate synthase activity
    		•  3.09252003125984 bayes_pls_golite062009
  • transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
    		•  3.07329302783164 bayes_pls_golite062009
  • catalytic activity
    		•  2.5009559386228 bayes_pls_golite062009
  • CoA carboxylase activity
    		•  1.75094739650292 bayes_pls_golite062009
  • ligase activity, forming carbon-carbon bonds
    		•  1.59015373957506 bayes_pls_golite062009
  • acetyl-CoA carboxylase activity
    		•  1.29064883699349 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  1.15639517822408 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.992008268375695 bayes_pls_golite062009
  • binding
    		•  0.346654244533873 bayes_pls_golite062009
  • biotin carboxylase activity
    		•  0.0172732430077291 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle