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Protein Overview: clec-143

General Information:
Name(s) found: clec-143 / CE02395 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00014063 locus:clec-143 status:Partially_confirmed UniProt:G5EE24 protein_id:CAA88487.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 400 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: sugar binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLVIFLTL AVVGTLCSPV LQNSAAVYAD RVCQGDIKNL WLDVVVVVDK SQLMTNAQLW  60
   61 QVRNTITQLF GSSRIGPTKY PADPRSTCVG VVTYDSDATT NAQLDGPHSF TDLYNVVQGS 120
  121 LNNVDSTNSS YLSKGLLAAE QALKNGRSRT YRFNFLKVVI VFAADYQGSG TSNDAFPIAR 180
  181 RMKYDNTIII TVACTTNQAA LDGLAQISSP QFSLVDEMNT SKLVKQLTTA LLSINCFCPE 240
  241 NWVQFTGNGT QYGVCLRGFT ATGGSYGYQH AIDYCASEVK NAHLANEFSQ AKHDFMQILM 300
  301 AISFPKYKPL EYYIGLRNLG NQWLWEQPQG QDMIPLNPLI YSKWAPGFPQ ANSTNQVIST 360
  361 QPLQEGSTDF FWAPPQTNDW LFICQVQASS TEYYTTYLEN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..240] PSI-BLAST 18.0 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit)
    2 View Details [241..400] PSI-BLAST 20.221849 Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.40277433411496 bayes_pls_golite062009
  • protein binding
    		•  1.15265134887541 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.31892974416108 bayes_pls_golite062009
  • protein binding
    		•  0.497694254254961 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.20526096756202 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle