| Protein: | clec-143 |
| Organism: | Caenorhabditis elegans |
| Length: | 400 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clec-143.
| Description | E-value | Query Range |
Subject Range |
|
|
189.0 | [0..2] | [399..4] |
|
Region A: Residues: [1-240] |
1 11 21 31 41 51
| | | | | |
1 MSTLVIFLTL AVVGTLCSPV LQNSAAVYAD RVCQGDIKNL WLDVVVVVDK SQLMTNAQLW 60
61 QVRNTITQLF GSSRIGPTKY PADPRSTCVG VVTYDSDATT NAQLDGPHSF TDLYNVVQGS 120
121 LNNVDSTNSS YLSKGLLAAE QALKNGRSRT YRFNFLKVVI VFAADYQGSG TSNDAFPIAR 180
181 RMKYDNTIII TVACTTNQAA LDGLAQISSP QFSLVDEMNT SKLVKQLTTA LLSINCFCPE 240
241
|
| Detection Method: |  |
| Confidence: | 18.0 |
| Match: | 1mf7A |
| Description: | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.40277433411496 | bayes_pls_golite062009 |
| protein binding | 1.15265134887541 | bayes_pls_golite062009 |
|
Region A: Residues: [241-400] |
1 11 21 31 41 51
| | | | | |
1 NWVQFTGNGT QYGVCLRGFT ATGGSYGYQH AIDYCASEVK NAHLANEFSQ AKHDFMQILM 60
61 AISFPKYKPL EYYIGLRNLG NQWLWEQPQG QDMIPLNPLI YSKWAPGFPQ ANSTNQVIST 120
121 QPLQEGSTDF FWAPPQTNDW LFICQVQASS TEYYTTYLEN
|
| Detection Method: | |
| Confidence: | 20.221849 |
| Match: | 1sl6A |
| Description: | Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.31892974416108 | bayes_pls_golite062009 |
| protein binding | 0.497694254254961 | bayes_pls_golite062009 |
| carbohydrate binding | 0.20526096756202 | bayes_pls_golite062009 |
