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Protein Overview: fbf-2

General Information:
Name(s) found: fbf-2 / CE01916 [WormBase]
Description(s) found:
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  • WBGene00001402 locus:fbf-2 Fem-3 mRNA-binding factor 2 status:Confirmed UniProt:Q09312 protein_id:CCD66119.1 [WormBase]
  • pir||T16128 hypothetical protein F21H12.5 - Caenorhabditis elegans [NCBI NR]
  • gi|726408|gb|AAC46716.1| Fem-3 mrna binding factor protein 2 [Caenorhabditis elegans] [NCBI NR]
  • gi|2496963|sp|Q09312.1|FBF2_CAEEL RecName: Full=Fem-3 mRNA-binding factor 2 [NCBI NR]
  • gi|17534639|ref|NP_495220.1| Fem-3 mRNA Binding Factor family member (fbf-2) [Caenorhabditis elegans] [NCBI NR]
  • Fem-3 mRNA-binding factor 2 OS=Caenorhabditis elegans GN=fbf-2 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE01916 WBGene00001402 locus:fbf-2 status:Partially_confirmed SW:Q09312 protein_id:AAC46716.1 [wormpep150.fasta]
  • 01916 WBGene00001402 locus:fbf-2 status:Partially_confirmed SW:Q09312 protein_id:AAC46716.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • fem-3 mRNA Binding Factor FBF-2, pumilio family member (71.8 kD) (fbf-2) [Caenorhabditis elegans]gi|726408|gb|AAC46716.1| Fem-3 mrna binding factor protein 2 [Caenorhabditis elegans]gi|7499607|pir||T16128 hypothetical protein F21H12.5 - Caenorhabditis e [nrdb_11152004_Chlamydomonas]
  • locus:fbf-2 status:Partially_confirmed SW:Q09312 protein_id:AAC46716.1 [wormpep115.fasta.reversed]
  • CE01916 locus:fbf-2 status:Partially_confirmed [wormpep80.hongbin]
  • CE01916 WBGene00001402 locus:fbf-2 status:Partially_confirmed UniProt:Q09312 protein_id:AAC46716.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE01916 WBGene00001402 locus:fbf-2 status:Partially_confirmed UniProt:Q09312 protein_id:AAC46716.1| [wormORF-contam.fasta]
  • Fem-3 mrna binding factor protein 2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Fem-3 mRNA-binding factor 2 [nr-271106-contam.fasta]
  • Fem-3 mRNA Binding Factor family member (fbf-2) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE01916 WBGene00001402 locus:fbf-2 status:Confirmed UniProt:Q09312 protein_id:CCD66119.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE01916 WBGene00001402 locus:fbf-2 status:Confirmed UniProt:Q09312 protein_id:CCD66119.1 Fem-3 mRNA-binding factor 2 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 632 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    feminization of hermaphroditic germ-line [IMPLink to PubMed article]
    germline cell cycle switching, mitotic to meiotic cell cycle [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    masculinization of hermaphrodite soma [IMPLink to PubMed article]
    negative regulation of translation [IGILink to PubMed article]
    masculinization of hermaphroditic germ-line [IMPLink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]
    mRNA 3'-UTR binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQSKMRRTN QFRKTSQKPP STGIDSYPTP AQSPMAQHET PMWDFNSLNP YFSMLNMNDG  60
   61 INYARHQQNH IVTSRPPTPL TDLMSLRSFQ SFPNVFMPVS RSRTSSFIQS DTDSSRLESD 120
  121 DFSQNVRCFS ADIDRSKSYG SSKHYHLKYS RPALSRNSRS FTRSNNVLPT WSLDSNGEMR 180
  181 SRLSLSEVLD SGDLMKFAVD KTGCQFLEKA VKGSLTSYQK FQLFEQVIGR KDDFLKLSTN 240
  241 IFGNYLVQSV IGISLATNDD GYTKRQEKLK NFISSQMTDM CLDKFACRVI QSSLQNMDLS 300
  301 LACKLVQALP RDARLIAICV DQNANHVIQK VVAVIPLKNW EFIVDFVATP EHLRQICSDK 360
  361 YGCRVVQTII EKLTADSMNV DLTSAAQNLR ERALQRLMTS VTNRCQELAT NEYANYIIQH 420
  421 IVSNDDLAVY RECIIEKCLM RNLLSLSQEK FASHVVEKAF LHAPLELLAE MMDEIFDGYI 480
  481 PHPDTGKDAL DIMMFHQFGN YVVQCMLTIC CDAVSGRRQT KEGGYDHAIS FQDWLKKLHS 540
  541 RVTKERHRLS RFSSGKKMIE TLANLRSTHP IYELQSSGHD SFKTDYFSTA SEHDGPELEK 600
  601 NGIEEGSLML EPRSNKSSVS VKFSSSGSHG DD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] MSA 35.271997 View MSA. No confident structure predictions are available.
    2 View Details [181..553] PSI-BLAST 104.0 Pumilio 1
    3 View Details [554..632] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.72717267135753 bayes_pls_golite062009
  • protein binding
    		•  1.01840651819417 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.726577126409925 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.198921736439162 bayes_pls_golite062009
  • translation regulator activity
    		•  0.1178495560226 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.10960901634151 bayes_pls_golite062009
  • catalytic activity
    		•  0.0114279309788371 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle