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Protein Overview: rpt-3

General Information:
Name(s) found: rpt-3 / CE01253 [WormBase]
Description(s) found:
Found 22 descriptions.
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  • WBGene00004503 locus:rpt-3 Probable 26S protease regulatory subunit 6B status:Confirmed UniProt:P46502 protein_id:CCD69926.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 414 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    cytoplasm [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    Biological Process: nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    protein catabolic process [IEALink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: nucleotide binding [IEALink to PubMed article]
    ATPase activity [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    nucleoside-triphosphatase activity [IEALink to PubMed article]
    metalloendopeptidase activity [IEALink to PubMed article]
    hydrolase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAALEEIG IAPLQENTSL RPPPLPATCV DVSSDDYIKL TTLERQLAHL QVMEDYIKLE  60
   61 TRNLEKELLH AQEEVKRIQS VPLVIGQFLE AVDQNHAIVG STTGSNYYVR VLSILDRELL 120
  121 KPGCSVALHK YSNALVDVLP PEADSSIQML RPDEKPDISY GDIGGLDMQK QEVREAVELP 180
  181 LTHGELYQQI GIDPPRGVLM YGPPGCGKTM LAKAVAANTA ASFIRVVGSE FVQKYLGEGP 240
  241 RMVRDVFRLA KENSPSIIFI DEIDAIATKR FDAQTGADRE VQRILLELLN QMDGFDQSTN 300
  301 VKVIMATNRQ DTLDPALLRP GRLDRKIEFP LPDRRQKRLV FSTVCSRMNL SDDVDLEDWV 360
  361 ARPDKISGAD INSICQEAGM QAVRENRYVV LTKDLEKAYK NVVKKDTNDF EFYK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..414] PSI-BLAST 82.522879 VCP/p97


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle