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Protein Overview: bas-1

General Information:
Name(s) found: bas-1 / CE01141 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00000239 locus:bas-1 status:Confirmed UniProt:H2KYG4 protein_id:CCD63122.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 514 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: carboxylic acid metabolic process [IEALink to PubMed article]
    Molecular Function: pyridoxal phosphate binding [IEALink to PubMed article]
    carboxy-lyase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQKLRTEG KKMLDFVADY WDGIRDRKPL PDVKPGYIND LVPAQAPATP EDWAKIFDDL  60
   61 ENVVVNGATH WHHPHFFAYF PTALSYQSIM ADILSGGIAG IGFTWKSCPS MTELEMSSLD 120
  121 WVVDLMGLPE HFKNSHNGPG CGIIQSTASD STMIAIMAAR ATHVERIKSE PTFMKWVSET 180
  181 GVGKTLKNIF DRVKVNKVDD EASGMITPYF HDPTVFERFV MYCSDQAHSS VEKGAMLSAV 240
  241 RMRKLKATRG FLGNYGVSRE TLQNAIKEDR ARGYIPFMFL ATVGTTCSCG VDQVDELGPV 300
  301 CVEEGLYLHV DAAYAGTFAL CEEFKYLIRG MEHVDSFNFN LHKAGMVNFD CSPMWFKNGT 360
  361 HVSRYFNVDA VYLAHEYQTT ASDYRHLQVA LGRRFRSLKI WFVLRNMGVD KIREYLRRTE 420
  421 LLAAEFSKLI LENGKFEHFV PQHLGLTCFR LKNSTNADNE KLCNAINDDR RIHLVPSTVH 480
  481 GTYFLRMVVC SQLTTLDDII YARDVIFELA EKLF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..514] PSI-BLAST 108.0 DOPA decarboxylase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 4-aminobutyrate transaminase activity
    		•  2.49533238079952 bayes_pls_golite062009
  • catalytic activity
    		•  2.29878871754893 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  1.28316822767388 bayes_pls_golite062009
  • transaminase activity
    		•  1.24990480711889 bayes_pls_golite062009
  • glutamate decarboxylase activity
    		•  1.23912528700231 bayes_pls_golite062009
  • 5-aminolevulinate synthase activity
    		•  1.01853440922526 bayes_pls_golite062009
  • transferase activity
    		•  0.737426388870721 bayes_pls_golite062009
  • glycine dehydrogenase (decarboxylating) activity
    		•  0.390162083170876 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor
    		•  0.390162083170876 bayes_pls_golite062009
  • binding
    		•  0.252160165096264 bayes_pls_golite062009
  • N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
    		•  0.223759435414525 bayes_pls_golite062009
  • L-aspartate:2-oxoglutarate aminotransferase activity
    		•  0.130698724135981 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.11598778799668 bayes_pls_golite062009
  • aromatic-L-amino-acid decarboxylase activity
    		•  0.10589462882093 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle