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Protein Overview: clec-151

General Information:
Name(s) found: clec-151 / CE00952 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00008659 locus:clec-151 C-lectin binding domain status:Partially_confirmed UniProt:Q19313 protein_id:CAA84652.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 628 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: sugar binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRTNSVPT SNRYKKSEFN NFSRVNQKLI SDSSHLQNAF ENFHALSLLC YTNAQVDRDW  60
   61 SFQQMCEFWG GEQTYRARSG YKSIEGDKCT FKFPKASNNK ESAQRYCEET VPYHINNPKA 120
  121 SEYKTTCEAE ATLICKSGWV QMFGRCYKIT KTMMTRDKAE EHCKNQQDQT STIAFMHREA 180
  181 LPFRWNDYFT RVSRIWMDAS EVVTNDLIHD VEGGNVLLAF DGYKYNLPNV AIARVSKNET 240
  241 AMVLCEYTPS MTKAESNYLL RRYGEIYYPP LVTSESAYMR TTSSRIRNEE DPLADHNYCT 300
  301 ELMKPVFRGG EAQSALPTQE FVKKLTETGA AEIIRTSSVS MNANKGERTI VDCVSHVDPY 360
  361 HRVHVKGDKN EETSITLNKT IWRQQEPHET CDAATWSSAA VLSRDSNRGL EAMSDARYAP 420
  421 LYCENILEYF SYSKCPEGFS EFPRVTSGQR WCHKYVHGAP LPYDDAEKKC AEMGAHLSGF 480
  481 TTQEEFKFLN ELVNKEYPNK NDIEVWLGAQ RKMSCPDAGK NFNGGFSTNE FDNCARSRVF 540
  541 EWRNGVAKNP PDFIGSGYDN WAELDEPNHL SDKERCVVMM HGKITKYWGY SSKYHDRRDM 600
  601 QINDIFCDWH FEYFCGLEVP VITVKKSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] MSA 3.463994 View MSA. No confident structure predictions are available.
    2 View Details [134..382] PSI-BLAST 4.0 Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
    3 View Details [383..628] FFAS03 5.46 Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.06958593058971 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.0461189069801637 bayes_pls_golite062009
  • protein binding
    		•  0.02015733731384 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle