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Protein Overview: ufd1

General Information:
Name(s) found: ufd1 / SPBC16A3.09c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • Cdc48-Ufd1-Npl4 complex component Ufd1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 342 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Cdc48p-Npl4p-Ufd1p AAA ATPase complex [ISS]
    cytosol [IDALink to PubMed article]
    endoplasmic reticulum [ISSLink to PubMed article]
    Biological Process: cellular response to stress [IEPLink to PubMed article]
    ER-associated protein catabolic process [ISSLink to PubMed article]
    ubiquitin-dependent protein catabolic process [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGGSFFSSD DDGFSMMSQL RSAFHNNVNQ RFDTRYRCYP VAMIPGEERP NVNYGGKVIL  60
   61 PPSALEKLSR LNVSYPMLFD FENEAAEKKT HGGVLEFIAE EGRVYLPYWM MTTLSLEPGD 120
  121 LVRVINTDIA QGSYVKLQPQ SVNFLDITDH RAVLENALRN FSTLTKSDIF EILYNDQVYQ 180
  181 IKVIDVQPDD SRHVVSVVET DLVVDFDPPI GYEESLQKNK QQNIAGVQGT MVTKIGYDEL 240
  241 VRQGDSNLMK GTGTKLNGKE VAEVPKINLL DVEKQECPAP LILPLGTYFF GYPYKAPSIE 300
  301 EDSKKDPNLF KFEGAGTSLR ASRKTNGTMG KGSSDDPIDI DA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..260] PSI-BLAST 83.045757 Ufd1 exhibits the AAA-ATPase fold with two distinct ubiquitin interaction sites
    2 View Details [261..342] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle