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Protein Overview: SPCC1620.07c

General Information:
Name(s) found: SPCC1620.07c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • lunapark homolog [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 334 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEA]
    endoplasmic reticulum [IDALink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWFFQKKKE FDFGGELDRL EMKLEEAQYN IDNIQSQKKK ILFRYTVCSL AIYTIGMAVW  60
   61 ASRSSILFQH PLFSKLFRIS LYILGVFSLY MFRWAIAWFC EKRLSRARMN LHKLNAEKRK 120
  121 ILDALKSRKE YFETQALLEK YGEQPTLAQK KLSNAAAAKS VPGSSSSSSD PMHPQHWYDR 180
  181 VLEGLVGANE NSENNREALI CSHCFHHNGL ASYGEKASDV RYVCLFCKAW NGPPIDKSLP 240
  241 SSEMDSNLQT NPSSISKGKK NNSNNTTQKG PNIISSPQVI NASSPVRKAG KKKSKKALPT 300
  301 SPLSSSSPDA SYNSVSDSFH TVAASVPESL TPTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run spc19 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..155] FFAS03 0.988 Formate dehydrogenase N, cytochrome (gamma) subunit
    2 View Details [156..334] MSA 3.048983 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.349353660965659 bayes_pls_golite062009
  • binding
    		•  0.0102629993652836 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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