YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1620.07c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWFFQKKKE FDFGGELDRL EMKLEEAQYN IDNIQSQKKK ILFRYTVCSL AIYTIGMAVW  60
   61 ASRSSILFQH PLFSKLFRIS LYILGVFSLY MFRWAIAWFC EKRLSRARMN LHKLNAEKRK 120
  121 ILDALKSRKE YFETQALLEK YGEQPTLAQK KLSNAAAAKS VPGSSSSSSD PMHPQHWYDR 180
  181 VLEGLVGANE NSENNREALI CSHCFHHNGL ASYGEKASDV RYVCLFCKAW NGPPIDKSLP 240
  241 SSEMDSNLQT NPSSISKGKK NNSNNTTQKG PNIISSPQVI NASSPVRKAG KKKSKKALPT 300
  301 SPLSSSSPDA SYNSVSDSFH TVAASVPESL TPTK

Type	Start	End	Confidence
Cytoplasmic	1	40	0.99
Transmembrane Helix	41	62	0.90
Non-Cytoplasmic	63	78	0.84
Transmembrane Helix	79	99	0.91
Cytoplasmic	100	334	0.98