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Protein Overview: rba50

General Information:
Name(s) found: rba50 / SPBC947.13 [Sanger Pombe]
Description(s) found:
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  • pir||T40769 hypothetical protein SPBC947.13 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582175|sp|O43088.1|RBA50_SCHPO RecName: Full=RNA polymerase II-associated protein rba50 [NCBI NR]
  • gi|2894300|emb|CAA17041.1| RNA polymerase II associated protein (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112055|ref|NP_595263.1| RNA polymerase II associated protein (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • RNA polymerase II associated protein [Sanger Pombe]
  • RNA polymerase II-associated protein rba50 OS=Schizosaccharomyces pombe GN=rba50 PE=2 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; SIMILAR TO S. CEREVISIAE YDR527W: O43088; [pompepVF.fasta]
  • Hypothetical protein [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • SPBC947.13 protein [4896.FASTAC]
  • |||fungal conserved protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2894300|emb|CAA17041.1| SPBC947.13 [Schizosaccharomyces pombe]gi|7491761|pir||T40769 hypothetical protein SPBC947.13 - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O43088) Hypothetical protein [pompep4896_normal_reversed]
  • |rba50||RNA polymerase II associated protein |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC947.13 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC947.13 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • RNA polymerase II-associated protein rba50 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rba50 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 452 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    DNA-directed RNA polymerase II, core complex [ISSLink to PubMed article]
    Biological Process: transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: DNA-directed RNA polymerase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENHRSVFSN VIGDIVEKPP KQLVEVKRSV QRHARGFPAV SRTLPKRESK SMSAYKEKML  60
   61 RKNKESPGLE GKGNLDDQGI DEENRVRLER MNDLEIEGAQ EEIRATIRDD LLEMLKKRAF 120
  121 KKKAERELAQ RKDRSSQVNT PDLSQRPSDD SFLSNEKLRS SEKLNRNLQS VLSSEAVDSS 180
  181 SGSPSPPMAL SQAEIRSRQT KRVMFPDKAE ELTKIFSLPT LAPIKGNEED DASEDAKHSP 240
  241 KKHSPALSDG TTSNDGAPLE FDTTHLPEKQ VTLDPNDPSF YEQLHDKYFP NLPVDEKQMQ 300
  301 WLHDPSPAEN SYHPSVESLH AHEIRFGFKG EIITPSQSQT IPVNEGLHHH GDAPFSAGYT 360
  361 LVELAHLLRS SFPTQRCIAI QTIGRIIYRL NSGEFREVLS PELHTLVEDA HIYELLAAAA 420
  421 SDQVKHLTVR SLAIEALWLC SQSQHGSSRS AV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..161] MSA 5.183997 View MSA. No confident structure predictions are available.
    2 View Details [162..313] MSA 1.183993 View MSA. No confident structure predictions are available.
    3 View Details [314..452] Pfam 44.376751 No description for PF08620.1 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle