YRC Public Data Repository - Protein Structure Prediction

Protein:	rba50
Organism:	Schizosaccharomyces pombe
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rba50.

Description	E-value	Query Range	Subject Range
gi\|6320735\|ref\|N... - Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p... RBA50 - Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p...	351.0	[0..10]	[444..2]
gi\|46432684, gi\|... - gi\|68489631\|ref\|XP_711337.1\| hypothetical protein CaO19.4133 [Candida albicans SC5314], gi\|68489533\|... orf19.11610, orf... - orf19.4133 CGDID:CAL0005669 Assembly 19, Contig19-10198 (6071, 4689) CDS, reverse complemented, tran...	326.0	[0..10]	[444..2]
gi\|46123949, gi\|... - gi\|46123949\|ref\|XP_386528.1\| hypothetical protein FG06352.1 [Gibberella zeae PH-1], gi\|42552126\|gb\|E...	325.0	[0..11]	[444..6]
gi\|45199246, gi\|... - gi\|45199246\|ref\|NP_986275.1\| AFR727Wp [Ashbya gossypii ATCC 10895], gi\|44985386\|gb\|AAS54099.1\| AFR72... gi\|44985386 - gi\|44985386\|gb\|AAS54099.1\| AFR727Wp [Ashbya gossypii ATCC 10895]	314.0	[0..10]	[451..2]
gi\|39942482, gi\|... - gi\|39942482\|ref\|XP_360778.1\| hypothetical protein MGG_03321 [Magnaporthe grisea 70-15], gb\|EAA51726....	310.0	[0..14]	[444..9]
gi\|85089605 - gi\|85089605\|ref\|XP_958025.1\| hypothetical protein NCU06859 [Neurospora crassa OR74A] gi\|32413330, gi\|... - gi\|32413330\|ref\|XP_327145.1\| hypothetical protein [Neurospora crassa], gi\|28919334\|gb\|EAA28789.1\| pr...	296.0	[0..14]	[444..9]
CG32104-PB - This gene is referred to in FlyBase by the symbol Dmel\CG32104 (CG32104, FBgn0052104). It is a prote...	291.0	[0..23]	[438..23]
gi\|50422791, gi\|... - gi\|50422791\|ref\|XP_459972.1\| hypothetical protein DEHA0E15961g [Debaryomyces hansenii CBS767], gi\|49... gi\|49655640 - gi\|49655640\|emb\|CAG88221.1\| DEHA2E15334p [Debaryomyces hansenii]	275.0	[0..10]	[444..2]
gi\|49067677, gi\|... - gi\|71003988\|ref\|XP_756660.1\| hypothetical protein UM00513.1 [Ustilago maydis 521], ref\|XP_398128.1\| ...	269.0	[0..25]	[437..208]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENHRSVFSN VIGDIVEKPP KQLVEVKRSV QRHARGFPAV SRTLPKRESK SMSAYKEKML  60
   61 RKNKESPGLE GKGNLDDQGI DEENRVRLER MNDLEIEGAQ EEIRATIRDD LLEMLKKRAF 120
  121 KKKAERELAQ RKDRSSQVNT PDLSQRPSDD SFLSNEKLRS S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [162-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKLNRNLQSV LSSEAVDSSS GSPSPPMALS QAEIRSRQTK RVMFPDKAEE LTKIFSLPTL  60
   61 APIKGNEEDD ASEDAKHSPK KHSPALSDGT TSNDGAPLEF DTTHLPEKQV TLDPNDPSFY 120
  121 EQLHDKYFPN LPVDEKQMQW LHDPSPAENS YH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [314-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSVESLHAHE IRFGFKGEII TPSQSQTIPV NEGLHHHGDA PFSAGYTLVE LAHLLRSSFP  60
   61 TQRCIAIQTI GRIIYRLNSG EFREVLSPEL HTLVEDAHIY ELLAAAASDQ VKHLTVRSLA 120
  121 IEALWLCSQS QHGSSRSAV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.376751
Match:	PF08620.1
Description:	No description for PF08620.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits