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Protein Overview: tfb5

General Information:
Name(s) found: tfb5 / SPBC32F12.15 [Sanger Pombe]
Description(s) found:
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  • gi|74624460|sp|Q9HDW3.1|TFB5_SCHPO RecName: Full=RNA polymerase II transcription factor B subunit 5; AltName: Full=General transcription and DNA repair factor IIH subunit 5; Short=TFIIH subunit 5 [NCBI NR]
  • gi|19112947|ref|NP_596155.1| transcription factor TFIIH complex subunit Tfb5 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|12231165|emb|CAC22107.1| transcription factor TFIIH complex subunit Tfb5 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • transcription factor TFIIH complex subunit Tfb5 [Sanger Pombe]
  • RNA polymerase II transcription factor B subunit 5 OS=Schizosaccharomyces pombe GN=tfb5 PE=2 SV=1 [Swiss-Prot]
  • CONSERVED PROTEIN; /NOTE=WAS ANNOTATED AS MISC_RNA ORIGINALLY, BEFORE WE IDENTIFIED SPBC32F12.15 FROM THE BLANDIN PAPER": Q9HDW3; [pompepVF.fasta]
  • CONSERVED HYPOTHETICAL PROTEIN: Q9HDW3; [pompepV13]
  • Hypothetical protein [pompep4896]
  • |||eukaryotic conserved protein [pompepnew.fasta]
  • SPBC32F12.15 protein [4896.FASTAC]
  • |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|12231165|emb|CAC22107.1| SPBC32F12.15 [Schizosaccharomyces pombe] [nrdb_11152004_Chlamydomonas]
  • |||transcription factor TFIIH complex |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (Q9HDW3) Hypothetical protein [pompep4896_normal_reversed]
  • |tfb5||transcription factor TFIIH complex subunit Tfb5 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC32F12.15 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • RNA polymerase II transcription factor B subunit 5 (General transcription and DNA repair factor IIH subunit 5) (TFIIH subunit 5) [nr-271106-contam.fasta]
  • SPBC32F12.15 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • RNA polymerase II transcription factor B subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfb5 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 68 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    holo TFIIH complex [ISSLink to PubMed article]
    Biological Process: positive regulation of translational initiation [ICLink to PubMed article]
    nucleotide-excision repair [ISSLink to PubMed article]
    transcription initiation from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: translation initiation factor activity [ISSLink to PubMed article]
    DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRAQKGLLL VECDPTVKQL ILNMDEQSPG IVIEEIDEER LLVNESRLEQ VKAELERRLE  60
   61 ENTYQVEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..68] PSI-BLAST 15.69897 No description for 2jnjA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle