YRC Public Data Repository - Protein Structure Prediction

Protein:	tfb5
Organism:	Schizosaccharomyces pombe
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tfb5.

Description	E-value	Query Range	Subject Range
gi\|218199880 - gi\|218199880\|gb\|EEC82307.1\| hypothetical protein OsI_26568 [Oryza sativa Indica Group] gi\|50938545, gi\|... - gi\|50938545\|ref\|XP_478800.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|34393555\|d...	97.0	[0..1]	[65..62]
TFB5_ASHGO - RNA polymerase II transcription factor B subunit 5 OS=Ashbya gossypii GN=TFB5 PE=3 SV=1 TFB5_ASHGO - RNA polymerase II transcription factor B subunit 5 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.5...	96.0	[0..1]	[68..1]
gi\|8778626, gi\|2... - gi\|8778626\|gb\|AAF79634.1\|AC025416_8 F5O11.12 [Arabidopsis thaliana], pir\|\|E86258 protein F5O11.12 [i...	95.0	[0..1]	[65..43]
TFB5_YEAST - RNA polymerase II transcription factor B subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 /... TFB5 - Component of the RNA polymerase II general transcription and DNA repair factor TFIIH; involved in tr...	84.0	[0..1]	[66..1]
TFB5_YARLI - RNA polymerase II transcription factor B subunit 5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) ... TFB5_YARLI - RNA polymerase II transcription factor B subunit 5 OS=Yarrowia lipolytica GN=TFB5 PE=3 SV=1	84.0	[0..1]	[68..1]
gi\|30038275 - gi\|30038275\|gb\|AAP12520.1\| REX1-S [Chlamydomonas reinhardtii]	81.0	[0..1]	[68..1]
TFB5_GIBZE - RNA polymerase II transcription factor B subunit 5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /... TFB5_GIBZE - RNA polymerase II transcription factor B subunit 5 OS=Gibberella zeae GN=TFB5 PE=3 SV=2	80.0	[0..1]	[58..1]
gi\|46136925, gi\|... - gi\|46136925\|ref\|XP_390154.1\| hypothetical protein FG09978.1 [Gibberella zeae PH-1], gi\|42546480\|gb\|E...	80.0	[0..1]	[59..1]

Back

Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRAQKGLLL VECDPTVKQL ILNMDEQSPG IVIEEIDEER LLVNESRLEQ VKAELERRLE  60
   61 ENTYQVEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	2jnjA
Description:	No description for 2jnjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits