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Protein Overview: SPBC17G9.02c

General Information:
Name(s) found: SPBC17G9.02c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • RNA polymerase II accessory factor, Cdc73 family [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 371 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Cdc73/Paf1 complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: regulation of RNA elongation [ICLink to PubMed article]
    RNA elongation from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: RNA polymerase II transcription elongation factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLLLLKKS IAEKKDVKLL ASSEATSKVE KIEDAQYILF DENTSPILID EPTKFIKLEN  60
   61 DSHFSLRSVY FAWLLRDTSI AEYIQQCSEL GIQNLTFLER TDLISWLEGS SDSEHIIGLE 120
  121 KPKPEGSTDA ATSMDVDLHK KSEEVNWLFE NTRTVSNHNS VLHGIKPIDF ISLRKDVLDY 180
  181 IHANKATASA HADEQERPAK KRNRDPIILL SPSASSLLTM HNIKKFLEEG IFVPPAEAAH 240
  241 AAGGGRGPEL IALSHKSSNS KFGTMRFIIV EGTEKFKPDY WDRVVCVFTT GQAWQFRDYK 300
  301 WSEPHQLFHH VKGFLVQYVG DPPHPATHDW NVEGIFVERL RRHTDREVVS QLWDKLERWM 360
  361 ENRWPLWNGR R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] MSA 1.026965 View MSA. No confident structure predictions are available.
    2 View Details [152..371] MSA 4.03899 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle