YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC17G9.02c
Organism:	Schizosaccharomyces pombe
Length:	371 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC17G9.02c.

Description	E-value	Query Range	Subject Range
gi\|42551740, gi\|... - gi\|46123699\|ref\|XP_386403.1\| hypothetical protein FG06227.1 [Gibberella zeae PH-1], gi\|42551740\|gb\|E...	415.0	[0..1]	[364..7]
CDC73 - Component of the Paf1p complex that binds to and modulates the activity of RNA polymerases I and II;... CDC73_YEAST - Cell division control protein 73 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC73 P...	400.0	[0..2]	[364..3]
gi\|67539448, gi\|... - gi\|67539448\|ref\|XP_663498.1\| hypothetical protein AN5894.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	400.0	[0..2]	[364..48]
gi\|25334124, gi\|... - gi\|3859701\|emb\|CAA21976.1\| unknown conserved hypothetical protein [Candida albicans], pir\|\|T52156 hy... gi\|46443118, gi\|... - gi\|68469389\|ref\|XP_721209.1\| potential RNA Pol II elongation accessory factor [Candida albicans SC53...	394.0	[0..3]	[364..6]
gi\|44983680 - gi\|44983680\|gb\|AAS52779.1\| AER095Wp [Ashbya gossypii ATCC 10895] gi\|45190701, gi\|... - gi\|45190701\|ref\|NP_984955.1\| AER095Wp [Ashbya gossypii ATCC 10895], gi\|44983680\|gb\|AAS52779.1\| AER09...	388.0	[0..4]	[366..3]
gi\|41469579, gi\|... - gi\|51964570\|ref\|XP_507070.1\| PREDICTED OSJNBa0034D21.3 gene product [Oryza sativa (japonica cultivar... gi\|218193445 - gi\|218193445\|gb\|EEC75872.1\| hypothetical protein OsI_12902 [Oryza sativa Indica Group]	387.0	[0..1]	[363..1]
gi\|38110077, gi\|... - gi\|39951715\|ref\|XP_363574.1\| hypothetical protein MG01500.4 [Magnaporthe grisea 70-15], gb\|EAA55849....	381.0	[0..2]	[364..670]
gi\|83769831 - gi\|83769831\|dbj\|BAE59966.1\| unnamed protein product [Aspergillus oryzae] gi\|169775001 - gi\|169775001\|ref\|XP_001821968.1\| hypothetical protein [Aspergillus oryzae RIB40]	380.0	[0..2]	[364..9]
gi\|115384552, gi... - gi\|115384552\|ref\|XP_001208823.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	373.0	[0..2]	[364..9]
gi\|159129522 - gi\|159129522\|gb\|EDP54636.1\| Pol II transcription elongation factor subunit Cdc73, putative [Aspergil... gi\|66853090, gi\|... - gi\|71001542\|ref\|XP_755452.1\| Pol II transcription elongation factor subunit Cdc73 [Aspergillus fumig...	369.0	[0..2]	[364..10]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLLLLKKS IAEKKDVKLL ASSEATSKVE KIEDAQYILF DENTSPILID EPTKFIKLEN  60
   61 DSHFSLRSVY FAWLLRDTSI AEYIQQCSEL GIQNLTFLER TDLISWLEGS SDSEHIIGLE 120
  121 KPKPEGSTDA ATSMDVDLHK KSEEVNWLFE N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [152-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRTVSNHNSV LHGIKPIDFI SLRKDVLDYI HANKATASAH ADEQERPAKK RNRDPIILLS  60
   61 PSASSLLTMH NIKKFLEEGI FVPPAEAAHA AGGGRGPELI ALSHKSSNSK FGTMRFIIVE 120
  121 GTEKFKPDYW DRVVCVFTTG QAWQFRDYKW SEPHQLFHHV KGFLVQYVGD PPHPATHDWN 180
  181 VEGIFVERLR RHTDREVVSQ LWDKLERWME NRWPLWNGRR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits