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Protein Overview: amo1

General Information:
Name(s) found: amo1 / SPBC15D4.10c [Sanger Pombe]
Description(s) found:
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  • pir||T39486 hypothetical protein SPBC15D4.10c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74626838|sp|O74315.1|AMO1_SCHPO RecName: Full=Nucleoporin-like protein amo1; AltName: Full=Aberrant microtubule protein 1 [NCBI NR]
  • gi|3451468|emb|CAA20485.1| nuclear rim protein Amo1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113042|ref|NP_596250.1| nuclear rim protein Amo1 [Schizosaccharomyces pombe] [NCBI NR]
  • nuclear rim protein Amo1 [Sanger Pombe]
  • Nucleoporin-like protein amo1 OS=Schizosaccharomyces pombe GN=amo1 PE=2 SV=1 [Swiss-Prot]
  • ZINC FINGER PROTEIN; ZF-CCCH TYPE: O74315; [pompepVF.fasta]
  • HYPOTHETICAL PROTEIN; LOW SIMILARITY TO NUCLEOPORINS: O74315; [pompepV13]
  • Hypothetical protein [pompep4896]
  • |||zinc finger protein [pompepnew.fasta]
  • Zinc finger protein; zf-CCCH type [4896.FASTAC]
  • |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|3451468|emb|CAA20485.1| zinc finger protein; zf-CCCH type [Schizosaccharomyces pombe]gi|7491374|pir||T39486 hypothetical protein SPBC15D4.10c - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • (O74315) Hypothetical protein [pompep4896_normal_reversed]
  • |amo1||nuclear rim protein Amo1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • Nucleoporin-like protein amo1 (Aberrant microtubule protein 1) [nr-271106-contam.fasta]
  • SPBC15D4.10c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC15D4.10c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Nucleoporin-like protein amo1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=amo1 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 475 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear membrane [IDALink to PubMed article]
    [NOT]spindle pole body [IDALink to PubMed article]
    [NOT]nuclear pore [IDALink to PubMed article]
    Biological Process: establishment of nucleus localization [IMPLink to PubMed article]
    establishment or maintenance of cell polarity [IGILink to PubMed article]
    cytoplasmic microtubule organization [IMPLink to PubMed article]
    establishment or maintenance of microtubule cytoskeleton polarity [IMPLink to PubMed article]
    negative regulation of microtubule polymerization [IMPLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVCKYFLQN RCRYGTNCKN QHTVPSNGQN AFSKVNVFRP ENGRPPIWVQ RRLKRSDLDN  60
   61 LLPNRRMKDI NDDLKNAKPQ WPFTGYSVVE NLPSIYEGDV SPEELRWWAY QAKATNNMQA 120
  121 YEQRQKQLMD DVEAKAAAVK RSPAAAFDEM RNKLVGKTNY KSIFDKSTSN STVTSNQFNK 180
  181 PTQNSPFNSF SNNNNSFNNN QQANDIFGAP TTSAFTSQLN ASPFSQNTSS NSFTGSNPVQ 240
  241 NNPSSFGSSS FGSATSGPSA FGGISQPNSS FVNSGQGIPN SSFSSFSQVA SGFSQSQNVN 300
  301 DPSSIFGPTV ASGFGIQNQP QQSAFQNLNT QFSLPNNSQP VFGHTSLTQP VNPNGFTVQP 360
  361 PATFMQQPQG PFVPPNTTFE SPFANVTSKI SASGFSNDNP ANKNIIQTPM FGSSNTIDGP 420
  421 INPIGASSIQ TLDDQVEMSN SNQNLAFPPE MIQQFEAQDF IPGKVPTTAP PPQFC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] deduced N/A No confident structure predictions are available.
    2 View Details [92..264] MSA 4.215997 View MSA. No confident structure predictions are available.
    3 View Details [265..475] MSA 4.218996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle