YRC Public Data Repository - Protein Structure Prediction

Protein:	amo1
Organism:	Schizosaccharomyces pombe
Length:	475 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for amo1.

Description	E-value	Query Range	Subject Range
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	149.0	[0..100]	[471..1350]
gi\|31540577 - gi\|31540577\|gb\|AAP48996.1\| cellulosomal scaffoldin anchoring protein C; ScaC [Acetivibrio cellulolyt...	147.0	[0..26]	[474..468]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	147.0	[0..100]	[451..1359]
gi\|780770, gi\|21... - gi\|780770\|gb\|AAB41034.1\| VsaA [Mycoplasma pulmonis], pir\|\|S70795 vsaA protein precursor - Mycoplasma...	146.0	[0..14]	[468..261]
gi\|83767526, gi\|... - gi\|9955855\|dbj\|BAB12227.1\| RNA polymerase II largest subunit [Aspergillus oryzae], gi\|83767526\|dbj\|B... gi\|169770395 - gi\|169770395\|ref\|XP_001819667.1\| hypothetical protein [Aspergillus oryzae RIB40]	145.0	[0..101]	[403..1427]
gi\|45185256, gi\|... - gi\|45185256\|ref\|NP_982973.1\| ABR027Cp [Ashbya gossypii ATCC 10895], gi\|44980914\|gb\|AAS50797.1\| ABR02... gi\|44980914 - gi\|44980914\|gb\|AAS50797.1\| ABR027Cp [Ashbya gossypii ATCC 10895]	144.0	[0..12]	[474..188]
gi\|156405, gi\|102468 - gi\|156405\|gb\|AAA28126.1\| RNA polymerase II, pir\|\|A34092 DNA-directed RNA polymerase (EC 2.7.7.6) II ...	141.0	[0..7]	[386..1456]
gi\|40217297, gi\|... - gi\|4808164\|emb\|CAB42795.1\| largest subunit of the RNA polymerase II complex [Drosophila guanche], gi...	140.0	[0..73]	[474..1479]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVCKYFLQN RCRYGTNCKN QHTVPSNGQN AFSKVNVFRP ENGRPPIWVQ RRLKRSDLDN  60
   61 LLPNRRMKDI NDDLKNAKPQ WPFTGYSVVE N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPSIYEGDVS PEELRWWAYQ AKATNNMQAY EQRQKQLMDD VEAKAAAVKR SPAAAFDEMR  60
   61 NKLVGKTNYK SIFDKSTSNS TVTSNQFNKP TQNSPFNSFS NNNNSFNNNQ QANDIFGAPT 120
  121 TSAFTSQLNA SPFSQNTSSN SFTGSNPVQN NPSSFGSSSF GSATSGPSAF GGI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [265-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQPNSSFVNS GQGIPNSSFS SFSQVASGFS QSQNVNDPSS IFGPTVASGF GIQNQPQQSA  60
   61 FQNLNTQFSL PNNSQPVFGH TSLTQPVNPN GFTVQPPATF MQQPQGPFVP PNTTFESPFA 120
  121 NVTSKISASG FSNDNPANKN IIQTPMFGSS NTIDGPINPI GASSIQTLDD QVEMSNSNQN 180
  181 LAFPPEMIQQ FEAQDFIPGK VPTTAPPPQF C

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits