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Protein Overview: SPBC8D2.13

General Information:
Name(s) found: SPBC8D2.13 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • SHQ1 family protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 451 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    Biological Process: box H/ACA snoRNP assembly [ISSLink to PubMed article]
    RNA processing [IC]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITPKFELRQ DEEFVYLDVH TPYIKAKNVE IDAFNNEVNF CIAPYFLKLE LPGNVLDDDR  60
   61 ANASYDISSG FVHIKFPKET PGEVFPDLDL LTTLLVNQNK EPVKKPLIEE VEDTPSPSTS 120
  121 QNASKDEEKE VKIDWQNIHF DDPDFDWGLL QRLDDEKMQY TSTSQYGFNN QYSGLLKYNA 180
  181 LVGNEINQIP EPERTPPSTR SEIRVQLEDE KFDAEHYMAD FYDREMIDEI LHYIPDYIGE 240
  241 FLLVQQGKSD RLLEFTSEEK EALAKLPKRS YLIDNPKNVY LCLVPLIFAY AYDNRTTLGD 300
  301 PTIESCWNIG TLSSTISCLD TNFLAIKDIF IACIRRSLAY PLYRNWDLAL TCWKDTHAIL 360
  361 SLGKRWILRV LLRIRNLFEH HDVYYIYNAI VLNDYAYWIQ TANDNVLAAL AYQVSECTIT 420
  421 KEETNWPLEE IEANVQETII ASDEESESIE K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] FFAS03 1.71 Co-chaperone p23
    2 View Details [137..252] deduced N/A No confident structure predictions are available.
    3 View Details [253..451] Pfam 125.275724 No description for PF04925.6 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.83120931289484 bayes_pls_golite062009
  • protein binding
    		•  0.924442061409513 bayes_pls_golite062009
  • catalytic activity
    		•  0.275980651078653 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle