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Protein Overview: SPBC428.06c

General Information:
Name(s) found: SPBC428.06c [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • histone deacetylase complex subunit, RXT2 family [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 242 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Rpd3L-Expanded complex [IDALink to PubMed article]
    Rpd3S complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [NAS]
    conjugation with cellular fusion [ISSLink to PubMed article]
    histone deacetylation [ICLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQFEEQIER FKQALFEDSD ASDSDSSIGE ALTNRGLKRK KGSKNVYYGC VGNSSGSSID  60
   61 IDVCYYNIGN TKRGVVSHFR RRIDPEWLDH DNPYNDINIA EIMSPLTKPQ DLLTHPAISS 120
  121 IFEQNYLSIL ASSALEIISA EHKYTAHLEQ LMVALLGDDP SLPGPPHEVF GISPEQCREL 180
  181 TITVQEALEK SKEFIRCWTN VRMDLLRAIR FKNKVIAYCQ GEDYNGNTQV LSKNESDGKP 240
  241 NS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..163] Pfam 65.065502 No description for PF08595.2 was found. No confident structure predictions are available.
    2 View Details [164..242] deduced N/A Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle