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Protein Overview: nam9

General Information:
Name(s) found: nam9 / SPBC13G1.01c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • mitochondrial ribosomal protein subunit S4 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 327 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    mitochondrial small ribosomal subunit [ISSLink to PubMed article]
    Biological Process: mitochondrial translation [RCALink to PubMed article]
    translation [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    structural constituent of ribosome [ISSLink to PubMed article]
    rRNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGKFRFSLK RGLLRPSWNK YNIYNIARKQ LPALNNRTLY QKKWNAKKET RSYHGPQLRE  60
   61 YQLKNAFRPK LEGVISSLDN KLPIPFMNQT YAFLESRLDM SIHRALFASS ALQARQLVLH 120
  121 GKVHVNGKPE RRAYRQLLPG DLVTVDQKSV MNCVSASSNN TPSIQDGKQT EQVSSKDGEN 180
  181 EKKKDNDDDL FEQTSNGKLP SINETISNFV PKPFMSLMAF IPAYLEVCFR TCSFVYVRDP 240
  241 VARPGLTEVP SPFPEDLHAL AYTYYIRSRN MRQGAARCQA RRLIPQKVRD ASFYQGPPEL 300
  301 YKKRNVSPKE AFSHRYPVRQ GKLTKLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..83] PSI-BLAST 39.69897 No description for 2uu9D was found.
    2 View Details [84..327] PSI-BLAST 38.0 Ribosomal small subunit pseudouridine 516 synthase RsuA; Pseudouridine synthase RsuA N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.39690558966302 bayes_pls_golite062009
  • structural molecule activity
    		•  8.82127733244958 bayes_pls_golite062009
  • catalytic activity
    		•  2.02180970970004 bayes_pls_golite062009
  • RNA binding
    		•  1.78858120096157 bayes_pls_golite062009
  • pseudouridine synthase activity
    		•  1.78394310345744 bayes_pls_golite062009
  • isomerase activity
    		•  1.03309280368247 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.926923419656671 bayes_pls_golite062009
  • binding
    		•  0.803280718980961 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  0.67639306881958 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.372664455687289 bayes_pls_golite062009
  • DNA binding
    		•  0.210201731988272 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle