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Protein Overview: SPBC336.11

General Information:
Name(s) found: SPBC336.11 [Sanger Pombe]
Description(s) found:
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  • pir||T40249 hypothetical protein SPBC336.11 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74625872|sp|Q9UST3.1|VPS52_SCHPO RecName: Full=Vacuolar protein sorting-associated protein 52 [NCBI NR]
  • gi|6048300|emb|CAB58163.1| GARP complex subunit Vps52 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112923|ref|NP_596131.1| GARP complex subunit Vps52 (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • GARP complex subunit Vps52 [Sanger Pombe]
  • Vacuolar protein sorting-associated protein 52 OS=Schizosaccharomyces pombe GN=vps52 PE=2 SV=1 [Swiss-Prot]
  • PUTATIVE SUBUNIT OF THE VPS52P-VPS53P-VPS54P COMPLEX, INVOLVED IN PROTEIN SORTING IN THE LATE GOLGI: Q9UST3; [pompepVF.fasta]
  • Putative subunit of the Vps52p-Vps53p-Vps54p complex, involved in protein sorting in the late golgi [pompep4896]
  • |||putative Vps52p-Vps53p-Vps54p complex subunit [pompepnew.fasta]
  • SPBC336.11 protein [4896.FASTAC]
  • |||GARP complex (predicted)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • putative Subunit of the Vps52p-Vps53p-Vps54p complex, involved in protein sorting in the late Golgi [Schizosaccharomyces pombe]gi|6048300|emb|CAB58163.1| SPBC336.11 [Schizosaccharomyces pombe]gi|7491609|pir||T40249 hypothetical protein SPBC336.11 - fiss [nrdb_11152004_Chlamydomonas]
  • |||GARP complex |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (Q9UST3) Putative subunit of the Vps52p-Vps53p-Vps54p complex, involved in protein sorting in the late golgi [pompep4896_normal_reversed]
  • |||GARP complex subunit Vps52 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC336.11 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC336.11 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |vps52||GARP complex subunit Vps52 |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Vacuolar protein sorting-associated protein 52 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps52 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 508 amino acids

    Gene Ontology:
    Cellular Component: GARP complex [ISSLink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    extrinsic to membrane [IEA]
    Biological Process: actin filament-based process [ISSLink to PubMed article]
    vesicle-mediated transport [ISSLink to PubMed article]
    retrograde transport, endosome to Golgi [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    Golgi to vacuole transport [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRASTQDVY DGSGDDLNKL DSLKSVLNDV LSSLERFQVD LDVATSDIYK VSERSNKIQV  60
   61 NLNNLKAVES ALGAEIDGAI LPPDLIKTIS TGDMDHPSWN SALEKLTSFL EGGEDDSSLG 120
  121 NMFNSLQINK DQKKLVDKLR DKAIERIRNY IVVTIKMFRQ AFVDVFPIRK HRLIANKNYY 180
  181 LFLFKFNRKL ALELQRAYIN TMNWFYLYHF EQYSRFLDKV HVLKGETIRV EEDRKGLFNL 240
  241 SKGAQQSYGN QMLSVNLRPQ DFDMNSVLTA STMHHIESSP QYIERVYCSW ELVLTEHVSS 300
  301 EYAFLLEYFN LSKDQQATVF AAIFEKTLHF SRKYITGLIS SSIDCIGILK SIRFTQKLAL 360
  361 QAQTNIVPVI EPHYNSMILF LWPRFQAVMD MHCESLRKTN LSVKPEEITS RPHPLSQRVA 420
  421 ELLYSLSMLS VNVVEAEPVA RSASRLAQDY VSMLQNLCKT VNDKRRQSRF LSNNYTLIST 480
  481 VLSGVSGNLA IEQKTYFEKL NENLTNFQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] FFAS03 1.04 No description for 2fxmA was found.
    2 View Details [80..508] FFAS03 1.48 No description for 2pftA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle