YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC336.11
Organism:	Schizosaccharomyces pombe
Length:	508 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC336.11.

Description	E-value	Query Range	Subject Range
gi\|60687520, gi\|... - gi\|60687520\|ref\|NP_766208.1\| vacuolar protein sorting 52 [Mus musculus], gi\|26342158\|dbj\|BAC34741.1\|...	568.0	[0..3]	[507..95]
gi\|62897293 - gi\|62897293\|dbj\|BAD96587.1\| suppressor of actin mutations 2-like isoform a variant [Homo sapiens]	566.0	[0..3]	[507..95]
VPS52_RAT - Vacuolar protein sorting-associated protein 52 homolog OS=Rattus norvegicus GN=Vps52 PE=2 SV=2	565.0	[0..3]	[507..95]
gi\|114606851 - gi\|114606851\|ref\|XP_001169532.1\| PREDICTED: suppressor of actin mutations 2-like isoform 3 [Pan trog...	564.0	[0..3]	[507..23]
gi\|109070722 - gi\|109070722\|ref\|XP_001116035.1\| PREDICTED: similar to suppressor of actin mutations 2-like isoform ...	564.0	[0..3]	[507..28]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRASTQDVY DGSGDDLNKL DSLKSVLNDV LSSLERFQVD LDVATSDIYK VSERSNKIQV  60
   61 NLNNLKAVES ALGAEIDGA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	2fxmA
Description:	No description for 2fxmA was found.

Predicted Domain #2

Region A:
Residues: [80-508]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILPPDLIKTI STGDMDHPSW NSALEKLTSF LEGGEDDSSL GNMFNSLQIN KDQKKLVDKL  60
   61 RDKAIERIRN YIVVTIKMFR QAFVDVFPIR KHRLIANKNY YLFLFKFNRK LALELQRAYI 120
  121 NTMNWFYLYH FEQYSRFLDK VHVLKGETIR VEEDRKGLFN LSKGAQQSYG NQMLSVNLRP 180
  181 QDFDMNSVLT ASTMHHIESS PQYIERVYCS WELVLTEHVS SEYAFLLEYF NLSKDQQATV 240
  241 FAAIFEKTLH FSRKYITGLI SSSIDCIGIL KSIRFTQKLA LQAQTNIVPV IEPHYNSMIL 300
  301 FLWPRFQAVM DMHCESLRKT NLSVKPEEIT SRPHPLSQRV AELLYSLSML SVNVVEAEPV 360
  361 ARSASRLAQD YVSMLQNLCK TVNDKRRQSR FLSNNYTLIS TVLSGVSGNL AIEQKTYFEK 420
  421 LNENLTNFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.48
Match:	2pftA
Description:	No description for 2pftA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits