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Protein Overview: SPAC890.04c

General Information:
Name(s) found: SPAC890.04c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • ribosome biogenesis protein Ytm1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 440 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    microtubule cytoskeleton [ISSLink to PubMed article]
    protein complex [RCALink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    nucleoplasm [IEA]
    Biological Process: cellular component organization [NAS]
    ribosome biogenesis [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAQSAPSGQ VQVRFTTRNE DLAVGDTPIF VPTSLKRYGL SQIVNHLLKT EKPTPFDFLV  60
   61 QGQLLKTTLD EYIVQNGLST ESILDIEYIQ STLPPAYLAS FSHDDWISGI QLTSDTILTS 120
  121 SYDGIARVWD KSGEIKFQST GCGSSLKSAS WHIPNQSFLT ASLDQKIFHW VIEEPESMLD 180
  181 AEKKSSGILQ TLFVGHKDIV ERVRSLESSS VFISASADNT VGIWDFERSP ETTLESFSSS 240
  241 ISKKRRRKNA EFTPQAGARS PLILCEGHTG PVMDIVFSDD PSVAYSVGQD HTIKTWDLIT 300
  301 GQNVDSKITK APLLCVEKLT DLHLVICGSS ARHIVVHDPR AGSDKIVSHT LSGHKNLVSG 360
  361 LSASPENPYM FASVSHDNTC RVWDVRATSG SIYTISRAEK TGSQWDKLFA VDWNKSIGIV 420
  421 TGGTDKQLQI NQSSSFGKSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..440] PSI-BLAST 44.39794 Cdc4 F-box and linker domains; Cdc4 propeller domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle