YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC890.04c
Organism:	Schizosaccharomyces pombe
Length:	440 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC890.04c.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	427.0	[0..2]	[437..1251]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	410.0	[0..2]	[437..1081]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	405.0	[0..3]	[439..1028]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	403.0	[0..1]	[440..601]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	398.0	[0..2]	[440..836]

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Predicted Domain #1

Region A:
Residues: [1-440]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAQSAPSGQ VQVRFTTRNE DLAVGDTPIF VPTSLKRYGL SQIVNHLLKT EKPTPFDFLV  60
   61 QGQLLKTTLD EYIVQNGLST ESILDIEYIQ STLPPAYLAS FSHDDWISGI QLTSDTILTS 120
  121 SYDGIARVWD KSGEIKFQST GCGSSLKSAS WHIPNQSFLT ASLDQKIFHW VIEEPESMLD 180
  181 AEKKSSGILQ TLFVGHKDIV ERVRSLESSS VFISASADNT VGIWDFERSP ETTLESFSSS 240
  241 ISKKRRRKNA EFTPQAGARS PLILCEGHTG PVMDIVFSDD PSVAYSVGQD HTIKTWDLIT 300
  301 GQNVDSKITK APLLCVEKLT DLHLVICGSS ARHIVVHDPR AGSDKIVSHT LSGHKNLVSG 360
  361 LSASPENPYM FASVSHDNTC RVWDVRATSG SIYTISRAEK TGSQWDKLFA VDWNKSIGIV 420
  421 TGGTDKQLQI NQSSSFGKSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	1nexB
Description:	Cdc4 F-box and linker domains; Cdc4 propeller domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits