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Protein Overview: lsm5

General Information:
Name(s) found: lsm5 / SPBC20F10.09 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • U6 snRNP-associated protein Lsm5 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 80 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    U4/U6 x U5 tri-snRNP complex [ISSLink to PubMed article]
    spliceosomal complex [RCALink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    U6 snRNP [ISSLink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    mRNA catabolic process [ISSLink to PubMed article]
    nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMTILPLEL IDKCIGSNLW VIMKSEREFA GTLVGFDDYV NIVLKDVTEY DTVTGVTEKH  60
   61 SEMLLNGNGM CMLIPGGKPE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] PSI-BLAST 13.0 Crystal structure of Cryptosporidium parvum U6 snRNA-associated Sm-like protein LSm5

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.04681172391952 bayes_pls_golite062009
  • protein binding
    		•  0.441246606284457 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle